CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	66.02	43.93
OQU80636	Sorghum	cytosol	84.25	39.97
TraesCS6B01G307800.1	Wheat	cytosol	69.89	37.82
Os08t0474700-01	Rice	plasma membrane	77.07	36.57
TraesCS4D01G083800.1	Wheat	cytosol	70.44	35.61
EER96867	Sorghum	cytosol	74.59	35.43
TraesCS4B01G085800.1	Wheat	cytosol	70.44	33.42
TraesCS4A01G230100.1	Wheat	cytosol	69.61	33.03
HORVU4Hr1G014740.3	Barley	cytosol	68.51	32.59
KRH07342	Soybean	cytosol	63.26	29.93
KRH66226	Soybean	cytosol, endoplasmic reticulum	63.26	29.86
Solyc01g081070.2.1	Tomato	cytosol, nucleus	62.15	29.45
VIT_15s0045g00540.t01	Wine grape	cytosol	62.98	29.19
AT2G21630.1	Thale cress	cytosol	53.31	25.36
Bra031206.1-P	Field mustard	cytosol	51.38	24.77
CDY13800	Canola	cytosol	49.72	23.87
OQU83385	Sorghum	cytosol, plastid	47.24	21.56
CDY59754	Canola	cytosol	50.55	19.32
EER93475	Sorghum	cytosol	35.36	17.0
EES02883	Sorghum	cytosol, plastid	14.36	5.99
PGSC0003DMT400004550	Potato	cytosol	2.76	4.39
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	1.38	2.79

Protein Annotations

Gene3D:2.30.30.380	Gene3D:3.30.1380.20	Gene3D:3.40.50.410	MapMan:35.2	UniProt:C5X5Q8	EnsemblPlants:EER99932
ProteinID:EER99932	ProteinID:EER99932.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0030127	InterPro:IPR036465
InterPro:NO_sig/Golgi_transp_ligand-bd	ProteinID:OQU90536.1	PFAM:PF04051	PFAM:PF04810	PFAM:PF04811	PANTHER:PTHR11141
PANTHER:PTHR11141:SF9	EnsemblPlantsGene:SORBI_3002G425800	SUPFAM:SSF111126	SUPFAM:SSF53300	SUPFAM:SSF81995	SUPFAM:SSF82919
InterPro:Sec23	InterPro:Sec23/24_trunk_dom	InterPro:TRAPP_component	UniParc:UPI00081AC79C	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:77229468..77233769

Molecular Weight (calculated)

39966.0 Da

IEP (calculated)

4.644

GRAVY (calculated)

0.091

Length

362 amino acids

Sequence
(BLAST)

001: MSEFLDLETQ DGIRMTWNVI PGTKQDATNC VVPVSVIYTP LKPNLSIPVL PYAPLSCRMC RSILNPFSVV DFVAKIWVCS FCFQRNHFPQ HYNSILENNL
101: PAELFPQYTT VEYASTSETG PVEPPVFLFV VDTYMIEEEI GYLKSALAQA IELLPDQSLV GFITFGTYVQ VHELGFGFLP KSYVFKGTKE VTQEQILDQM
201: SFFAGKTKPT SCVIAGARDG LSAESIARFL LPASECEFVL NSVIEELQKD HWPVPADKRS SRCTGVALSV AASLLGVCVP GSGARIMAFV GGPSTEGPGS
301: VSLSAFAFLF SELVQYNQTQ VDNITELERR LEDAGYAVGA RVLELLCHTE KETQRRGRLQ DL

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.