Factsheet for Os08t0474700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80636	Sorghum	cytosol	91.09	91.09
TraesCS4B01G085800.1	Wheat	cytosol	87.68	87.68
TraesCS4A01G230100.1	Wheat	cytosol	87.29	87.29
HORVU4Hr1G014740.3	Barley	cytosol	87.02	87.25
TraesCS6B01G307800.1	Wheat	cytosol	76.28	87.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	20.31	86.59
TraesCS4D01G083800.1	Wheat	cytosol	80.86	86.17
PGSC0003DMT400004550	Potato	cytosol	24.64	82.46
GSMUA_AchrUn_...	Banana	cytosol	56.23	78.86
EER99932	Sorghum	cytosol	36.57	77.07
VIT_15s0045g00540.t01	Wine grape	cytosol	78.77	76.95
KRH07342	Soybean	cytosol	77.06	76.86
Solyc01g081070.2.1	Tomato	cytosol, nucleus	76.93	76.83
KRH66226	Soybean	cytosol, endoplasmic reticulum	77.06	76.66
Os09t0460200-00	Rice	plasma membrane	55.57	73.48
Os11t0433500-01	Rice	cytosol, plasma membrane	31.06	67.52
AT2G21630.1	Thale cress	cytosol	67.1	67.28
CDY13800	Canola	cytosol	64.48	65.25
Bra031206.1-P	Field mustard	cytosol	62.78	63.78
CDY59754	Canola	cytosol	62.91	50.69
Os03t0742800-02	Rice	cytosol	44.82	45.18
Os01t0321700-01	Rice	cytosol, plastid	15.73	14.83

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
EntrezGene:4345819	InterPro:ADF-H/Gelsolin-like_dom_sf	ProteinID:BAD09341.1	ProteinID:BAF23944.1	ProteinID:BAT05871.1	GO:GO:0000139
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114
InterPro:Gelsolin-like_dom	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	EnsemblPlantsGene:Os08g0474700	EnsemblPlants:Os08t0474700-01
PFAM:PF00626	PFAM:PF04810	PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141
PANTHER:PTHR11141:SF9	UniProt:Q6ZDG9	SUPFAM:SSF53300	SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754
SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S
InterPro:Sec23_C	UniParc:UPI000023ADCB	RefSeq:XP_015650237.1	RefSeq:XP_015650238.1	InterPro:Znf_Sec23_Sec24	InterPro:Znf_Sec23_Sec24_sf
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

Similar to COPII subunit Sec23 (Fragment). (Os08t0474700-01)

Coordinates

chr8:+:23390712..23402922

Molecular Weight (calculated)

84495.4 Da

IEP (calculated)

5.239

GRAVY (calculated)

0.002

Length

763 amino acids

Sequence
(BLAST)

001: MSEFLDLELQ DGIRMPWNVI PGTKQDAANC VVPVSAIYTP LRPNPAIPVL PYGPLRCRMC RSILNPFCVV DYVAKIWVCP FCFQRNHFPQ HYSSISESNL
101: PAELFPQYTT VEFMSTAETG PVVPPVFLFV VDTCMIEEEI DYLKSALAQA IELLPDQSLV GFITFGTYVQ VHELGFGLLP KSYVFKGTKE VTKDQILEQM
201: CFFAGKTKPT TGVIAGSRDG LSAESISRFL LPASECEFVL NSIIEELQKD PWPVSADQRA SRCTGTALSV AASLLGVCVP GSGARIMAFI GGPSTEGPGS
301: IVSKSLSEPI RSHKDLDKGS APLYTKAVKF YEEISKQLVH QGHVLDFFAC ALDQVGVAEM KVAVERTGGI VVLAESFGHS VFKESLQRIF QSSDNDLGLS
401: FNGIFEINCS KDVKIQGIIG PCTSLEKKSP LSSDTVVGQG STSAWKMCGL DRKTSICLVF DIAKKDGPDA ISQSTSNQFY FQFLTYYQHH EGQMRLRATT
501: LSRRWVAGSG GVQDLIDGFD QEAAAAVMAR LVSFKMEAEA DFDPIRWLDR ALISMCSKFG DYQKETPSSF SLSPRLSIFP QFMFNLRRSQ FVQVFNNSPD
601: ETAYFRMMLN RENVANAVVM IQPSLISYSF QSGPEPVLLD VTAIAADRIL LLDSYFTIVI FHGITIAQWR KAGYQDQQGH EAFAQLLKAP REETDSIIKE
701: RFPVPRLVVC DQYGSQARFL LAKLNPSVTY NSDNPPPPGG DVIFTDDVSF EVFMDHLQRL AVQ

Best Arabidopsis Sequence Match ( AT2G21630.1 )
(BLAST)

001: MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD
101: NNLPPELFPH STTVEYLCDS FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH CTKSYFFHGN KDCTKDQLLD
201: QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP
301: GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG
401: LSSCGIFEIN CSKDIKVQGI IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ FYFQFLTYYQ HSNGQTRLRV
501: TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS
601: PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM
701: SERFPTPRLV ICDQYGSQAR FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H

Arabidopsis Description

At2g21630 [Source:UniProtKB/TrEMBL;Acc:Q9SIJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.