Factsheet for TraesCS6B01G307800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G083800.1	Wheat	cytosol	98.06	91.62
TraesCS4B01G085800.1	Wheat	cytosol	98.21	86.11
TraesCS4A01G230100.1	Wheat	cytosol	97.46	85.45
HORVU4Hr1G014740.3	Barley	cytosol	95.96	84.36
Os08t0474700-01	Rice	plasma membrane	87.0	76.28
OQU80636	Sorghum	cytosol	86.25	75.62
GSMUA_AchrUn_...	Banana	cytosol	60.09	73.9
TraesCS5B01G239200.1	Wheat	cytosol	79.67	69.95
EER99932	Sorghum	cytosol	37.82	69.89
VIT_15s0045g00540.t01	Wine grape	cytosol	75.93	65.04
Solyc01g081070.2.1	Tomato	cytosol, nucleus	73.24	64.14
KRH66226	Soybean	cytosol, endoplasmic reticulum	72.8	63.49
KRH07342	Soybean	cytosol	72.35	63.27
AT2G21630.1	Thale cress	cytosol	66.07	58.08
CDY13800	Canola	cytosol	62.03	55.04
Bra031206.1-P	Field mustard	cytosol	61.14	54.46
TraesCS4B01G163100.3	Wheat	plastid	59.64	51.02
PGSC0003DMT400004550	Potato	cytosol	16.29	47.81
CDY59754	Canola	cytosol	60.39	42.66
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	10.76	40.22
TraesCS5B01G386700.1	Wheat	cytosol	43.05	38.3
TraesCS3B01G222900.1	Wheat	plastid	15.55	12.29

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0016020	GO:GO:0030127	InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF04810
PFAM:PF04811	PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF2	SUPFAM:SSF53300
SUPFAM:SSF81811	SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom
InterPro:Sec23/24_helical_dom_sf	InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	EnsemblPlantsGene:TraesCS6B01G307800	EnsemblPlants:TraesCS6B01G307800.1	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

No Description!

Coordinates

chr6B:-:551796470..551804003

Molecular Weight (calculated)

73452.5 Da

IEP (calculated)

5.869

GRAVY (calculated)

0.053

Length

669 amino acids

Sequence
(BLAST)

001: MSEFLELEAR DGVRMTWNVI PGTKQDAASC VVPVSAIYTP LNPNPAIPVL PYAPLRCRIC RSILNPFSVA DFGSKMWLCP FCFQRNHFPQ QYSAISQSNL
101: PTELYPECCT VEYMATAETG PVSPPVFLFV VDTCMIEEEI GYLKSALAQA VELLPDQSLV GFITFGTYVQ VHELGFGLLP KSHVFKGTKE IKKDQILEQM
201: GFLTGKTKPT TGVITGARDG VSAESIGRYL LPASECEFML NSLIEELQKD PWPVCADQRA SRCTGAALSV AASLLGICVP GSGGRIMAFI GGPSTEGLGS
301: IISKPLSDPI RSHKDLDKGS APLYNKAVKF YEEIGNQLVH QGHVLDLFAC ALDQVGVAEM KVAVERTGGI VVLAESFGHS VFKDSLRRIF QSSDSDLGGL
401: SFNGIFEINC SKDVKIQGII GPCTSLEKKG PLSSDTVVGQ GNTSAWRMCG LDRKTSLCLL FDMAKKDAPD AIGQSQNNLF YFQFLTYYQH HDGQMRLRST
501: TISRRWVAGS GSVQELITGF DQEAAAAVMA RLVSFKMEAE VDFDPVRWLD RALISLCSKF GDYQKEAPSS FSLSPRLSIF PQFIFNLRRS QFIQVFNNSP
601: DETAYFRMML NRENVANAVV KIQPSLISYS FQSGPEPVLL DVSAIAGDRI LLLDSYFTVV IFHGITIAQ

Best Arabidopsis Sequence Match ( AT1G05520.1 )
(BLAST)

001: MSEMASMDPE GIDGVRMTWN VWPRTKVEAS KCVIPVAACI SPIRYHRDIP SVEYAPLRCR ICTAALNPFA RVDFLAKIWI CPICFQRNHF PPHYHVMSET
101: NVPCELYPQY TTVEYTLPNP SQPTGVGNFD QTGAVSGQPS PSVFVFVLDT CMIEEEFGYA KSALKQAIGL LPENALVGFV SFGTQAHVHE LGFSDLTKVY
201: VFRGDKEISK DQVLEQLGLG ASGRRNPVGG FPMGRDNSAN FGYSGVNRFL LPASDCEFTI DLLLEELQTD QWPVQAGRRQ SRCTGVAISV ATGLLGACFP
301: GTGARIVALI GGPCSEGPGT IVSKDLSEPL RSHKDLDKDA APFYKKAEKF YDALANQLVN QGHVLDLFAS ALDQVGVAEM KAAVERTGGL VVLSESFGHS
401: VFKDSFKRVF EDGEESLGLC FNGTLEICCS KDIKIQGIIG PCASLQKKGP SVADTVIGEG NTTQWKMCGL DKRTCLTVFF DLSSSDQSSA PGGVNNQLYL
501: QFMTSYQNSK GKTLQRVTTV TRQWVDTGLS TEELVQGFDQ ETAAVVVARL ASLKMETEEG FDATRWLDRN LIRLCSKFGD YRKDDPASFT LNPNFSLFPQ
601: FTFNLRRSQF VQVFNNSPDE TAYNRMLLNR ENISNAAVMI QPSLTTYSFN SLPQPALLDV ASIGADRILL LDSYISVVVF HGMTIAQWRN LGYQNQPEHQ
701: AFAQLLEAPQ EDAQMIIRDR FPVPRLVVCD QHGSQARFLL AKLNPSATYN NASEMNAGSD IIFTDDVSLQ VFFQHLQKLA VQS

Arabidopsis Description

At1g05520/T25N20_16 [Source:UniProtKB/TrEMBL;Acc:Q8H0S3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.