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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d005902_P001 Maize cytosol 98.29 98.29
TraesCS5B01G239200.1 Wheat cytosol 88.98 88.98
HORVU5Hr1G068810.2 Barley cytosol 88.58 88.58
TraesCS5A01G241100.1 Wheat nucleus 88.32 88.32
OQU80636 Sorghum cytosol 86.88 86.76
GSMUA_AchrUn_... Banana cytosol, mitochondrion 19.29 82.12
GSMUA_AchrUn_... Banana cytosol 56.17 78.68
PGSC0003DMT400004550 Potato cytosol 23.49 78.51
Os09t0460200-00 Rice plasma membrane 57.61 76.08
VIT_15s0045g00540.t01 Wine grape cytosol 77.82 75.93
KRH66226 Soybean cytosol, endoplasmic reticulum 76.25 75.75
KRH07342 Soybean cytosol 75.85 75.56
EER99932 Sorghum cytosol 35.43 74.59
Solyc01g081070.2.1 Tomato cytosol, nucleus 74.67 74.48
TraesCS5D01G247600.1 Wheat cytosol, plastid 87.8 72.88
AT2G21630.1 Thale cress cytosol 66.01 66.1
CDY13800 Canola cytosol 62.73 63.4
Bra031206.1-P Field mustard cytosol 61.81 62.72
OQU83385 Sorghum cytosol, plastid 63.39 60.91
CDY59754 Canola cytosol 62.07 49.95
EER93475 Sorghum cytosol 44.49 45.02
EES02883 Sorghum cytosol, plastid 17.85 15.67
Protein Annotations
Gene3D:1.20.120.730Gene3D:2.30.30.380Gene3D:2.60.40.1670MapMan:22.4.1.3.1Gene3D:3.40.20.10Gene3D:3.40.50.410
EntrezGene:8063710InterPro:ADF-H/Gelsolin-like_dom_sfUniProt:C5X2D2EnsemblPlants:EER96867ProteinID:EER96867ProteinID:EER96867.1
GO:GO:0000139GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0006810GO:GO:0006886GO:GO:0006888GO:GO:0008150
GO:GO:0008270GO:GO:0009987GO:GO:0015031GO:GO:0016020GO:GO:0016043GO:GO:0030127
GO:GO:0090114InterPro:Gelsolin-like_domInterPro:Gelsolin-like_dom_sfInterPro:IPR029006InterPro:IPR036465PFAM:PF00626
PFAM:PF04810PFAM:PF04811PFAM:PF04815PFAM:PF08033PANTHER:PTHR11141PANTHER:PTHR11141:SF9
EnsemblPlantsGene:SORBI_3002G227500SUPFAM:SSF53300SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919
InterPro:Sec23InterPro:Sec23/24_helical_domInterPro:Sec23/24_helical_dom_sfInterPro:Sec23/24_trunk_domInterPro:Sec23_24_beta_SInterPro:Sec23_C
UniParc:UPI0001A8361DRefSeq:XP_002460346.1InterPro:Znf_Sec23_Sec24InterPro:Znf_Sec23_Sec24_sfSEG:segInterPro:vWFA_dom_sf
Description
hypothetical protein
Coordinates
chr2:+:61936520..61944823
Molecular Weight (calculated)
84533.4 Da
IEP (calculated)
4.975
GRAVY (calculated)
0.001
Length
762 amino acids
Sequence
(BLAST)
001: MSEFLDLEVQ DGIRMPWNVI PGTKQETVNC VIPVSAIYTP LKSIPDIPVL PYSPLRCRMC RSILNPFSIV DYVAKIWVCP FCFQRNQFPQ HYSSISENNL
101: PAELFPQYTT VEYISSTETG PIVPPVFIFV VDTCMIEEEI GYLKSALAQA VELLPDNSLV GFITFGTYVQ VHELGFGLLP KSYVFKGTKE VTKEQILEQM
201: CFFAGKKMPT TGVIAGTRDG LSSESISRFL LPASECEFVL NSVIEEIQKD PWPVPADQRA SRCTGAALSV AANLLGVCVP GSGARIMAFV GGPSTEGPGS
301: IVSKSLSEPI RSHKDLDKDS APLYDKAVKF YDQIAKQLVH QGHVLDLFAC AVDQVGVAEM KVAIEKTGGI VVLAESFGHS VFKDSLLRIF QSTDDNLGLS
401: FNGILEINCS KDVKVQGIIG PCSSLEKKSP LSSDTVIGQG NTSAWKMCGL DRKTSLCLVY DIAKKDGPDS IGQSTSNQFY FQFLTYYQHN EGQMRLRSTT
501: ISRRWVSGDN NVEELVAGFD QEAAAAVMAR LVSFKMETEV DFDPVRWLDR ALIRICSKFG DYQKETPSSF SLSPRLSIFP QFIFNLRRSQ FVQVFNNSPD
601: ETAYFRMMLD RENVANAVVM IQPSLISYSF QSGPEPVLLD ATAIASDKIL LLDSYFTVVI FHGVTIAQWR NAGYQDQEGH EVFAQLLKAP HEEANLIIKE
701: RFPVPRLVVC DQYGSQARFL LAKLNPSVTY NSDNASPGGD VIFTDDVSFQ VFMDHLQRLA VQ
Best Arabidopsis Sequence Match ( AT2G21630.1 )
(BLAST)
001: MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD
101: NNLPPELFPH STTVEYLCDS FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH CTKSYFFHGN KDCTKDQLLD
201: QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP
301: GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG
401: LSSCGIFEIN CSKDIKVQGI IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ FYFQFLTYYQ HSNGQTRLRV
501: TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS
601: PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM
701: SERFPTPRLV ICDQYGSQAR FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H
Arabidopsis Description
At2g21630 [Source:UniProtKB/TrEMBL;Acc:Q9SIJ7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.