Factsheet for TraesCS5A01G241100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G239200.1	Wheat	cytosol	98.16	98.16
HORVU5Hr1G068810.2	Barley	cytosol	96.33	96.33
EER96867	Sorghum	cytosol	88.32	88.32
Zm00001d005902_P001	Maize	cytosol	88.06	88.06
TraesCS5D01G247600.1	Wheat	cytosol, plastid	97.77	81.15
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	18.9	80.45
TraesCS4A01G230100.1	Wheat	cytosol	80.45	80.34
PGSC0003DMT400004550	Potato	cytosol	22.97	76.75
GSMUA_AchrUn_...	Banana	cytosol	53.41	74.82
KRH07342	Soybean	cytosol	73.62	73.33
KRH66226	Soybean	cytosol, endoplasmic reticulum	73.75	73.27
Os09t0460200-00	Rice	plasma membrane	54.99	72.62
VIT_15s0045g00540.t01	Wine grape	cytosol	74.41	72.6
Solyc01g081070.2.1	Tomato	cytosol, nucleus	72.44	72.25
AT2G21630.1	Thale cress	cytosol	63.78	63.86
CDY13800	Canola	cytosol	61.42	62.07
Bra031206.1-P	Field mustard	cytosol	60.63	61.52
TraesCS4A01G151800.3	Wheat	cytosol, plastid	61.42	59.54
CDY59754	Canola	cytosol	60.89	49.0
TraesCS5A01G382500.2	Wheat	cytosol	43.44	44.02
TraesCS3A01G195200.1	Wheat	plastid	16.27	14.66

Protein Annotations

Gene3D:1.20.120.730	Gene3D:2.30.30.380	Gene3D:2.60.40.1670	MapMan:22.4.1.3.1	Gene3D:3.40.20.10	Gene3D:3.40.50.410
InterPro:ADF-H/Gelsolin-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0008150	GO:GO:0008270
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030127	GO:GO:0090114	InterPro:Gelsolin-like_dom
InterPro:Gelsolin-like_dom_sf	InterPro:IPR029006	InterPro:IPR036465	PFAM:PF00626	PFAM:PF04810	PFAM:PF04811
PFAM:PF04815	PFAM:PF08033	PANTHER:PTHR11141	PANTHER:PTHR11141:SF9	SUPFAM:SSF53300	SUPFAM:SSF81811
SUPFAM:SSF81995	SUPFAM:SSF82754	SUPFAM:SSF82919	InterPro:Sec23	InterPro:Sec23/24_helical_dom	InterPro:Sec23/24_helical_dom_sf
InterPro:Sec23/24_trunk_dom	InterPro:Sec23_24_beta_S	InterPro:Sec23_C	EnsemblPlantsGene:TraesCS5A01G241100	EnsemblPlants:TraesCS5A01G241100.1	InterPro:Znf_Sec23_Sec24
InterPro:Znf_Sec23_Sec24_sf	TIGR:cd11287	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

No Description!

Coordinates

chr5A:+:457076068..457081831

Molecular Weight (calculated)

84345.2 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.007

Length

762 amino acids

Sequence
(BLAST)

001: MSEFLELEAL DGIRMPWNVI PGTKEDAVSC VVPVSAIYTP LKSIPDMPVV PYAPLRCRMC RSILNPFSRV DYNAKIWLCT FCFQRNQFPQ HYSSISENNL
101: PPELFPQYTT IEYMSTAETG PVMPPVFIFV VDTCIIEEEI GYLKSALAQA TELLPDNSLV GFITFGTYVQ VHELGFGLLP KSYVFKGTKE VSKEQILEQM
201: CFFAGKQKPT TWVIAGTRDG LSSESISRFL VPASECEFVL NSVIEELQKD PWHIPADQRA SRCTGAALSV AASLLGVCVP GSGARIMAFV GGPSTEGPGS
301: IVSKSLTEPI RSHKDLDKDS APLFDKAVKF YDQIAKQLVH QGHVLDLFAC AVDQVGVAEM KVAIEKTGGI VVLAESFGHS VFKDSLLRIF QSADNGLGLS
401: FNGILEINCS KDVKIQGIIG PCSSLEKKSP LSADTVIGQG NTSAWKMCGL DKKTSLCFVY DISRKVGPDT VAQQTGEQLY LQFVTYYQHH EGQMRLRTTT
501: ISRQWASGAA TVQELIDGFD QEAAAAVVAR LVSFKMETEA DFDPIRWLDR ALIRLCTKFG DYQKETPSSF SLSPRLSIFP QFMFNLRRSQ FVQVFNNSPD
601: ETAYFRMTLE RENVGNAVAM IQPSLISYSF QSGPMPVLLD ATAIGPDKIL LLDSYFSVVI FHGITIAQWR KAGYQDQEGH EAFAQLLKAP HDESDAIIKE
701: RFPVPRLVVC DQYGSQARFL LAKLNPSVAY NSDNPAPGGD VIFTDDVSFE VFMDHLQRLA VQ

Best Arabidopsis Sequence Match ( AT2G21630.1 )
(BLAST)

001: MAEFGELEAQ DGVRMPWNII PVATKKEQSI DSEVPVSAIY TPLKPLRSQS LLLPYSPLRC RTCRSVLNPY SVVDFSACNW GCPFCFNRNP FPLNYSSVAD
101: NNLPPELFPH STTVEYLCDS FSSPSPPVFL FVVDTCLISE ELDFLKSSLF QALDLLPDTS ILGLITFDSL VRVYELGFPH CTKSYFFHGN KDCTKDQLLD
201: QLSFFVKNPK PSSGVIAGAR DGLSSDDIAR FLLPASDCHF TLHSVLEELG NSPWPVAADH RPARCTGVAL RIAASLLGAC FPGSAARIMA FIGGPSTQGP
301: GAIVSRELSD PIRSHKDIDK DSAMYYHKAV EFYEMLAKQL VHQGHVLDVF ASSVDQVGIA ELKVAVEQTG GFVVLAESFG HSVFRDSLKR VCQSGENDLG
401: LSSCGIFEIN CSKDIKVQGI IGPCASLEKK GPLCSDTAIG QGHTSAWKMC GLDNNTSICL VFEIAKIDTA DVVLQSQSNQ FYFQFLTYYQ HSNGQTRLRV
501: TTLSRRWVMG TESLQELSNG FDQEAAAVVM ARLISSKMET QPEFNPQRWV DKALINLCTW FGDYQKGNPS SFSLSSQLSI FPQFVFHLRR SQFVQVFNNS
601: PDETAYFRMI LYRENVSNSV VMIQPSLISF SFHSPPEPIL LDVASIAADR ILLLDSYFTL VIFHGSTIAQ WRKAGYHNQP EHQAFGHLLQ SPRDYADTIM
701: SERFPTPRLV ICDQYGSQAR FLLAKLNPCD GDAHFSGQSN VFTDDVSLSV FLDHLRRLIV H

Arabidopsis Description

At2g21630 [Source:UniProtKB/TrEMBL;Acc:Q9SIJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.