CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26667.1	CDX70995	AT5G22290.1	21798944
AT5G26667.1	CDX88803	AT5G22290.1	21798944
AT5G26667.1	CDX92368	AT5G22290.1	21798944
AT5G26667.1	CDY09128	AT5G22290.1	21798944
AT5G26667.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19768	Canola	cytosol	97.61	97.61
CDX87047	Canola	cytosol	33.01	95.83
CDY05528	Canola	cytosol	94.74	92.09
CDY65143	Canola	cytosol	94.26	91.63
AT5G26667.1	Thale cress	cytosol	89.0	89.42
CDY61106	Canola	cytosol	94.26	84.55
CDX80561	Canola	cytosol	93.78	80.0
VIT_15s0045g01310.t01	Wine grape	cytosol	79.43	79.05
GSMUA_Achr4P12240_001	Banana	cytosol	76.56	78.05
GSMUA_Achr4P11630_001	Banana	cytosol	77.51	77.88
Os07t0624700-01	Rice	cytosol, extracellular	77.51	77.14
EES14324	Sorghum	cytosol	77.51	76.42
Os02t0778400-01	Rice	cytosol	77.99	76.17
TraesCS2D01G168400.1	Wheat	cytosol	76.08	74.65
TraesCS2B01G187300.1	Wheat	cytosol	76.08	74.65
EES05888	Sorghum	cytosol	76.08	74.65
KRH48911	Soybean	nucleus	84.21	74.58
GSMUA_Achr3P27510_001	Banana	cytosol	75.6	74.53
TraesCS2A01G161300.1	Wheat	cytosol	73.68	74.4
KRH66383	Soybean	cytosol, endoplasmic reticulum	83.73	74.15
HORVU2Hr1G029350.10	Barley	endoplasmic reticulum	74.16	69.2
CDY41189	Canola	cytosol	66.99	68.29
Zm00001d018277_P002	Maize	cytosol	74.16	68.28
TraesCS7B01G069300.1	Wheat	cytosol	69.38	67.76
TraesCS7A01G163500.1	Wheat	cytosol	68.9	67.29
Zm00001d052108_P003	Maize	cytosol	73.68	66.38
TraesCS7D01G165600.1	Wheat	cytosol	67.94	65.14
CDX71833	Canola	cytosol	42.11	61.11
PGSC0003DMT400062219	Potato	cytosol	59.81	57.87
Solyc08g077300.2.1	Tomato	cytosol, plastid	59.33	57.41
Os06t0203500-01	Rice	mitochondrion	39.23	55.78
GSMUA_Achr10P...	Banana	cytosol	65.55	55.02
KXG19119	Sorghum	cytosol	62.2	54.62
TraesCS3D01G138500.1	Wheat	cytosol	59.33	51.67
Zm00001d035916_P001	Maize	cytosol	53.59	50.45
TraesCS3A01G137600.1	Wheat	cytosol	57.89	50.42
TraesCS3B01G155300.1	Wheat	cytosol	56.94	49.58
Os06t0109600-01	Rice	cytosol, plasma membrane	57.42	49.38
CDX94461	Canola	mitochondrion	54.55	45.06
CDX89427	Canola	mitochondrion	54.55	45.06
HORVU3Hr1G026180.16	Barley	mitochondrion	55.98	39.13
HORVU7Hr1G034340.5	Barley	cytosol, nucleus, plastid	69.86	37.24
CDX83159	Canola	cytosol	29.19	24.9
CDY34035	Canola	cytosol	29.19	24.9
CDY48140	Canola	cytosol	27.75	24.17
CDY41515	Canola	cytosol	27.27	23.75
CDY16727	Canola	cytosol	27.27	23.75
CDX84406	Canola	cytosol	27.27	23.75
CDY58452	Canola	plastid	32.06	23.43
CDY63236	Canola	plastid	26.32	21.48
CDX86341	Canola	plastid	27.75	21.25
CDY46767	Canola	mitochondrion	28.23	21.0
CDX79727	Canola	mitochondrion	27.27	20.73
CDY63499	Canola	mitochondrion	27.75	20.64
CDY19972	Canola	plastid	29.19	20.54
CDY55438	Canola	plastid	27.27	20.36
CDY18459	Canola	plastid	27.27	20.36
CDY70087	Canola	plastid	27.27	20.28
CDX85310	Canola	plastid	29.19	19.87
CDY44634	Canola	plastid	26.32	18.39
CDX74861	Canola	mitochondrion	26.32	18.21
CDX91924	Canola	mitochondrion	22.01	17.16
CDX74321	Canola	mitochondrion	21.53	16.92
CDY41765	Canola	plastid	29.67	10.78
CDY58453	Canola	cytosol	0.96	0.65

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00240+2.7.4.14	KEGG:00730+2.7.4.3	KEGG:00983+2.7.4.14	Gene3D:3.40.50.300	MapMan:6.2.3.1
GO:A0A078DFB5	InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	EnsemblPlants:CDX87049	ProteinID:CDX87049	ProteinID:CDX87049.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004127	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006207	GO:GO:0006221	GO:GO:0008150	GO:GO:0008152	GO:GO:0009041
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019205	EnsemblPlantsGene:GSBRNA2T00145935001
HAMAP:MF_00235	HAMAP:MF_03172	InterPro:P-loop_NTPase	PFAM:PF00406	PRINTS:PR00094	ScanProsite:PS00113
PANTHER:PTHR23359	PANTHER:PTHR23359:SF118	MetaCyc:PWY-7176	MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01359
InterPro:UMP_CMP_kinase	UniPathway:UPA00588	UniParc:UPI0004EDDC5D	:	:	:

Description

BnaC09g03640D

Coordinates

chrLK031849:-:170283..172872

Molecular Weight (calculated)

23291.9 Da

IEP (calculated)

6.303

GRAVY (calculated)

-0.397

Length

209 amino acids

Sequence
(BLAST)

001: MGSIVDASNK EVNGTASEKR PAVIFVLGGP GSGKGTQCAY IVEHFGYTHL SAGDLLRAEI KSGSENGTMI QNMIKEGKIV PSEVTIKLLQ KAIQENGNDK
101: FLIDGFPRNE ENRAAFEKVT GIEPKFVLFF DCPEEEMERR LLGRNQGRED DNIETIRKRF KVFLESSLPV IQYYEAKGKV RKIHAAKPIE EVFQEVKAVF
201: SPEAVKVEA

Best Arabidopsis Sequence Match ( AT3G60180.2 )
(BLAST)

001: METPIDAPNK DEHECPRWKK STVVFVLGGP GSGKGTQCAN VVKHFSYTHF SAGDLLRAEI KSGSEFGAMI QSMIAEGRIV PSEITVKLLC KAMEESGNDK
101: FLIDGFPRNE ENRNVFENVA RIEPAFVLFF DCPEEELERR IMSRNQGRED DNIETIKKRF KVFVESTLPI ISYYESKGKL RKINAAKSSE EVFEAVRVLF
201: ASET

Arabidopsis Description

UMK1Probable UMP-CMP kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.