Factsheet for PGSC0003DMT400062219

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26667.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G26667.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077300.2.1	Tomato	cytosol, plastid	93.98	93.98
GSMUA_Achr4P12240_001	Banana	cytosol	59.26	62.44
GSMUA_Achr4P11630_001	Banana	cytosol	59.26	61.54
CDX87047	Canola	cytosol	20.37	61.11
PGSC0003DMT400004310	Potato	cytosol	58.8	60.77
CDX87049	Canola	cytosol	57.87	59.81
AT5G26667.1	Thale cress	cytosol	57.41	59.62
CDY19768	Canola	cytosol	57.41	59.33
GSMUA_Achr3P27510_001	Banana	cytosol	57.87	58.96
Bra036580.1-P	Field mustard	cytosol	56.94	58.85
AT3G60961.1	Thale cress	cytosol	37.04	58.82
TraesCS2A01G161300.1	Wheat	cytosol	56.02	58.45
CDY65143	Canola	cytosol	57.87	58.14
Bra020536.1-P	Field mustard	cytosol	57.41	57.94
CDY05528	Canola	cytosol	57.41	57.67
EES14324	Sorghum	cytosol	56.48	57.55
AT3G60180.1	Thale cress	cytosol	54.17	57.35
TraesCS2B01G187300.1	Wheat	cytosol	56.48	57.28
TraesCS2D01G168400.1	Wheat	cytosol	56.48	57.28
Os07t0624700-01	Rice	cytosol, extracellular	55.56	57.14
CDY41189	Canola	cytosol	54.17	57.07
Os02t0778400-01	Rice	cytosol	56.48	57.01
EES05888	Sorghum	cytosol	55.09	55.87
TraesCS7A01G163500.1	Wheat	cytosol	54.63	55.14
TraesCS7B01G069300.1	Wheat	cytosol	54.63	55.14
HORVU2Hr1G029350.10	Barley	endoplasmic reticulum	56.48	54.46
Bra009898.1-P	Field mustard	cytosol	57.87	54.11
TraesCS7D01G165600.1	Wheat	cytosol	54.17	53.67
Zm00001d018277_P002	Maize	cytosol	55.56	52.86
CDY61106	Canola	cytosol	56.94	52.79
Bra007512.1-P	Field mustard	cytosol	50.46	52.4
Zm00001d052108_P003	Maize	cytosol	55.56	51.72
CDX80561	Canola	cytosol	56.94	50.2
GSMUA_Achr10P...	Banana	cytosol	57.41	49.8
TraesCS3A01G137600.1	Wheat	cytosol	54.17	48.75
CDX71833	Canola	cytosol	32.41	48.61
TraesCS3D01G138500.1	Wheat	cytosol	53.24	47.92
TraesCS3B01G155300.1	Wheat	cytosol	53.24	47.92
KXG19119	Sorghum	cytosol	52.78	47.9
Os06t0109600-01	Rice	cytosol, plasma membrane	53.7	47.74
Zm00001d035916_P001	Maize	cytosol	48.15	46.85
Os06t0203500-01	Rice	mitochondrion	30.56	44.9
HORVU3Hr1G026180.16	Barley	mitochondrion	51.85	37.46
HORVU7Hr1G034340.5	Barley	cytosol, nucleus, plastid	55.09	30.36
PGSC0003DMT400049085	Potato	mitochondrion	43.98	30.06
PGSC0003DMT400003152	Potato	cytosol	26.39	23.55
PGSC0003DMT400039275	Potato	mitochondrion	25.0	22.13
PGSC0003DMT400036202	Potato	plastid	26.85	19.53
PGSC0003DMT400074574	Potato	mitochondrion	20.37	16.3
PGSC0003DMT400071737	Potato	plastid	21.3	15.97
PGSC0003DMT400067159	Potato	plastid	21.3	15.49
PGSC0003DMT400034809	Potato	extracellular	19.91	15.19

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00240+2.7.4.14	KEGG:00730+2.7.4.3	KEGG:00983+2.7.4.14	EntrezGene:102603990	Gene3D:3.40.50.300
MapMan:6.2.3.1	InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004127	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006207	GO:GO:0006221	GO:GO:0008150
GO:GO:0008152	GO:GO:0009041	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019205	GO:GO:0046939	GO:GO:0046940	UniProt:M1C8Q2	HAMAP:MF_00235
HAMAP:MF_03172	InterPro:P-loop_NTPase	PFAM:PF00406	EnsemblPlantsGene:PGSC0003DMG400024212	PGSC:PGSC0003DMG400024212	EnsemblPlants:PGSC0003DMT400062219
PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF103	SUPFAM:SSF52540	TIGRFAMs:TIGR01359
InterPro:UMP_CMP_kinase	UniParc:UPI000296E25F	RefSeq:XP_006358592.1	RefSeq:XP_006358593.1	RefSeq:XP_006358594.1	RefSeq:XP_015169497.1

Description

Uridylate kinase plant [Source:PGSC_GENE;Acc:PGSC0003DMG400024212]

Coordinates

chr8:-:50155060..50159524

Molecular Weight (calculated)

24493.7 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.590

Length

216 amino acids

Sequence
(BLAST)

001: MDLHKEGDRG SAKQKKVKIV FVIGGPGSGK GTQCKRIAQQ FGYTHLSVGE ILRQEISSGS ETGSMIQKIM KEGKLVPSDV TVRLLQQAMQ GINSDKFLID
101: GFPRNEENVK AFEDLTKMEP EFVLYLDCPQ DEMEKRLLSR NEGREDDNIE TIRKRFKVFM ESTLPTIEYY ESKGKIRKVD AGKSVDEVFE SIKVIFSQGK
201: DNKVPPSRHK CKCLIL

Best Arabidopsis Sequence Match ( AT5G26667.4 )
(BLAST)

001: MGSVDAANGS GKKPTVIFVL GGPGSGKGTQ CAYIVEHYGY THLSAGDLLR AEIKSGSENG TMIQNMIKEG KIVPSEVTIK LLQKAIQENG NDKFLIDGFP
101: RNEENRAAFE KVTEIEPKFV LFFDCPEEEM EKRLLGRNQG REDDNIETIR KRFKVFLESS LPVIHYYEAK GKVRKINAAK PIEAVFEEVK AIFSPEAEKV
201: EA

Arabidopsis Description

PYR6UMP-CMP kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UDQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.