Factsheet for Solyc08g077300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26667.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT5G26667.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062219	Potato	cytosol	93.98	93.98
CDX87047	Canola	cytosol	20.83	62.5
GSMUA_Achr4P12240_001	Banana	cytosol	59.26	62.44
GSMUA_Achr4P11630_001	Banana	cytosol	59.26	61.54
CDX87049	Canola	cytosol	57.41	59.33
AT5G26667.1	Thale cress	cytosol	56.94	59.13
CDY19768	Canola	cytosol	56.94	58.85
AT3G60961.1	Thale cress	cytosol	37.04	58.82
GSMUA_Achr3P27510_001	Banana	cytosol	57.41	58.49
TraesCS2A01G161300.1	Wheat	cytosol	56.02	58.45
Solyc01g088480.2.1	Tomato	cytosol, plastid, unclear	56.48	58.37
Bra036580.1-P	Field mustard	cytosol	56.48	58.37
CDY65143	Canola	cytosol	57.41	57.67
EES14324	Sorghum	cytosol	56.48	57.55
Bra020536.1-P	Field mustard	cytosol	56.94	57.48
TraesCS2B01G187300.1	Wheat	cytosol	56.48	57.28
TraesCS2D01G168400.1	Wheat	cytosol	56.48	57.28
CDY05528	Canola	cytosol	56.94	57.21
Os07t0624700-01	Rice	cytosol, extracellular	55.56	57.14
Os02t0778400-01	Rice	cytosol	56.48	57.01
AT3G60180.1	Thale cress	cytosol	53.24	56.37
CDY41189	Canola	cytosol	53.24	56.1
EES05888	Sorghum	cytosol	55.09	55.87
TraesCS7B01G069300.1	Wheat	cytosol	54.17	54.67
HORVU2Hr1G029350.10	Barley	endoplasmic reticulum	56.48	54.46
TraesCS7A01G163500.1	Wheat	cytosol	53.7	54.21
Bra009898.1-P	Field mustard	cytosol	57.41	53.68
Zm00001d018277_P002	Maize	cytosol	55.56	52.86
TraesCS7D01G165600.1	Wheat	cytosol	53.24	52.75
CDY61106	Canola	cytosol	56.48	52.36
Zm00001d052108_P003	Maize	cytosol	55.56	51.72
Bra007512.1-P	Field mustard	cytosol	49.54	51.44
CDX80561	Canola	cytosol	56.48	49.8
GSMUA_Achr10P...	Banana	cytosol	56.94	49.4
TraesCS3A01G137600.1	Wheat	cytosol	52.78	47.5
KXG19119	Sorghum	cytosol	52.31	47.48
TraesCS3D01G138500.1	Wheat	cytosol	51.85	46.67
TraesCS3B01G155300.1	Wheat	cytosol	51.85	46.67
CDX71833	Canola	cytosol	31.02	46.53
Os06t0109600-01	Rice	cytosol, plasma membrane	51.85	46.09
Zm00001d035916_P001	Maize	cytosol	46.76	45.5
Os06t0203500-01	Rice	mitochondrion	29.63	43.54
Solyc03g083610.2.1	Tomato	mitochondrion, plastid	44.44	40.51
HORVU3Hr1G026180.16	Barley	mitochondrion	51.39	37.12
HORVU7Hr1G034340.5	Barley	cytosol, nucleus, plastid	54.63	30.1
Solyc05g014980.2.1	Tomato	cytosol, extracellular, plastid	26.85	23.97
Solyc03g111200.2.1	Tomato	plastid	25.46	22.54
Solyc06g065270.2.1	Tomato	plastid	24.07	18.18
Solyc04g049690.2.1	Tomato	mitochondrion	21.3	17.1
Solyc09g007180.2.1	Tomato	plastid	21.76	16.73
Solyc03g005050.2.1	Tomato	extracellular, mitochondrion	19.91	15.19
Solyc02g093990.2.1	Tomato	mitochondrion	15.28	12.74
Solyc12g010380.1.1	Tomato	plastid	26.85	9.57

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00240+2.7.4.14	KEGG:00730+2.7.4.3	KEGG:00983+2.7.4.14	Gene3D:3.40.50.300	MapMan:6.2.3.1
InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004127
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006207	GO:GO:0006221	GO:GO:0008150	GO:GO:0008152
GO:GO:0009041	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019205	GO:GO:0046939	GO:GO:0046940	UniProt:K4CN90	HAMAP:MF_00235	HAMAP:MF_03172
InterPro:P-loop_NTPase	PFAM:PF00406	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF103
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g077300.2	EnsemblPlants:Solyc08g077300.2.1	TIGRFAMs:TIGR01359	InterPro:UMP_CMP_kinase	UniParc:UPI000276C2AA

Description

UMP-CMP kinase [Source:UniProtKB/TrEMBL;Acc:K4CN90]

Coordinates

chr8:-:61201659..61206762

Molecular Weight (calculated)

24412.5 Da

IEP (calculated)

7.956

GRAVY (calculated)

-0.604

Length

216 amino acids

Sequence
(BLAST)

001: MDLHKEGDTG SAKQKKVKIV FVIGGPGSGK GTQCKRIAQQ FGYTHLSVGE ILRQETSSGS ETGHMVQKIM KEGKLVPSDV TVRLLQQAMQ GIDNDKFLID
101: GFPRDEENVK AFEDLTKMEP EFVLYLDCPQ DEMEKRLLSR NEGREDDNIE TIRKRLKVFV ESTLPTIEYY ESKGKIRKVD AGKSIDEVFE SIKVIFSPGK
201: DNKMPPSKHK CKCLIL

Best Arabidopsis Sequence Match ( AT5G26667.4 )
(BLAST)

001: MGSVDAANGS GKKPTVIFVL GGPGSGKGTQ CAYIVEHYGY THLSAGDLLR AEIKSGSENG TMIQNMIKEG KIVPSEVTIK LLQKAIQENG NDKFLIDGFP
101: RNEENRAAFE KVTEIEPKFV LFFDCPEEEM EKRLLGRNQG REDDNIETIR KRFKVFLESS LPVIHYYEAK GKVRKINAAK PIEAVFEEVK AIFSPEAEKV
201: EA

Arabidopsis Description

PYR6UMP-CMP kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UDQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.