Factsheet for Solyc03g083610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049085	Potato	mitochondrion	80.17	60.13
VIT_16s0022g00980.t01	Wine grape	mitochondrion	57.38	57.14
KRH39992	Soybean	mitochondrion	54.01	55.41
KRH23793	Soybean	mitochondrion	52.74	52.97
Solyc01g088480.2.1	Tomato	cytosol, plastid, unclear	45.99	52.15
CDX94461	Canola	mitochondrion	55.27	51.78
CDX89427	Canola	mitochondrion	54.85	51.38
AT4G25280.1	Thale cress	mitochondrion	56.12	51.35
GSMUA_Achr4P18070_001	Banana	cytosol, plastid	52.74	50.81
Zm00001d024919_P001	Maize	mitochondrion	43.04	50.0
Bra013883.1-P	Field mustard	mitochondrion	54.85	49.06
TraesCS2A01G036500.1	Wheat	mitochondrion	49.79	48.56
HORVU2Hr1G005480.2	Barley	mitochondrion	49.79	48.56
TraesCS2D01G035600.1	Wheat	mitochondrion	49.37	48.35
TraesCS2B01G049600.1	Wheat	mitochondrion	49.37	48.15
EES10340	Sorghum	mitochondrion	50.63	48.0
Solyc08g077300.2.1	Tomato	cytosol, plastid	40.51	44.44
Os04t0105500-02	Rice	mitochondrion	50.63	42.7
Solyc06g065270.2.1	Tomato	plastid	27.85	23.08
Solyc09g007180.2.1	Tomato	plastid	25.74	21.71
Solyc04g049690.2.1	Tomato	mitochondrion	23.63	20.82
Solyc05g014980.2.1	Tomato	cytosol, extracellular, plastid	19.41	19.01
Solyc03g111200.2.1	Tomato	plastid	18.57	18.03
Solyc03g005050.2.1	Tomato	extracellular, mitochondrion	18.14	15.19
Solyc02g093990.2.1	Tomato	mitochondrion	15.61	14.29
Solyc12g010380.1.1	Tomato	plastid	23.21	9.08

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00240+2.7.4.14	KEGG:00730+2.7.4.3	KEGG:00983+2.7.4.14	Gene3D:3.40.50.300	MapMan:6.2.3.1
InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004127
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006207	GO:GO:0006221	GO:GO:0008150
GO:GO:0008152	GO:GO:0009041	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019205	GO:GO:0046939	GO:GO:0046940	UniProt:K4BID7	HAMAP:MF_00235
InterPro:P-loop_NTPase	PFAM:PF00406	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF118
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g083610.2	EnsemblPlants:Solyc03g083610.2.1	TIGRFAMs:TIGR01359	InterPro:UMP_CMP_kinase	UniParc:UPI0002768CE2

Description

No Description!

Coordinates

chr3:+:53563661..53567185

Molecular Weight (calculated)

26770.3 Da

IEP (calculated)

8.908

GRAVY (calculated)

-0.389

Length

237 amino acids

Sequence
(BLAST)

001: MWRRRFTSLP LFFSHLQQVR RADELKICQA FCTETVKPPV EGESNSGRNS PFVAFVLGGP GSGKGTQCLK IAETFGFDHI GAGDLLRKEM HSDSENGAMI
101: QKLMKEGSIA PSEVTVKLIK KAIESAENRK FLIDGFPRSE ENRVAYERII GAEPNFVLFF DCPEEVMVKR VLNRNEGRVD DNEHTVKERL KVYKAITLPV
201: ANHYAMKGKL YKVDGTGTQE EIFERVRPIF ASLRLST

Best Arabidopsis Sequence Match ( AT4G25280.2 )
(BLAST)

001: MWRRVALLSP MISSSSRSLK LSQAASGLKV GESFATDIIS QEERVSPPKE KAPFITFVLG GPGSGKGTQC EKIVETFGLQ HLSAGDLLRR EIAMHTENGA
101: MILNLIKDGK IVPSEVTVKL IQKELESSDN RKFLIDGFPR TEENRVAFER IIRADPDVVL FFDCPEEEMV KRVLNRNQGR IDDNITTMKK RLKIFNALNR
201: PVIDYYKNKG KLYTINAVGT VDDIFQHVLP IFNSFEQLKE SSHVNPQSHL GSSLVENSS

Arabidopsis Description

UMK2P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G25280]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.