Factsheet for Solyc01g088480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004310	Potato	cytosol	97.13	97.13
VIT_15s0045g01310.t01	Wine grape	cytosol	77.51	77.14
Os07t0624700-01	Rice	cytosol, extracellular	76.56	76.19
EES05888	Sorghum	cytosol	77.51	76.06
GSMUA_Achr4P11630_001	Banana	cytosol	75.12	75.48
EES14324	Sorghum	cytosol	75.6	74.53
Os02t0778400-01	Rice	cytosol	76.08	74.3
GSMUA_Achr4P12240_001	Banana	cytosol	72.73	74.15
TraesCS2A01G161300.1	Wheat	cytosol	72.25	72.95
TraesCS2D01G168400.1	Wheat	cytosol	74.16	72.77
TraesCS2B01G187300.1	Wheat	cytosol	74.16	72.77
GSMUA_Achr3P27510_001	Banana	cytosol	73.21	72.17
Zm00001d018277_P002	Maize	cytosol	77.03	70.93
KRH66383	Soybean	cytosol, endoplasmic reticulum	78.95	69.92
KRH48911	Soybean	nucleus	78.47	69.49
Zm00001d052108_P003	Maize	cytosol	76.56	68.97
HORVU2Hr1G029350.10	Barley	endoplasmic reticulum	73.21	68.3
TraesCS7B01G069300.1	Wheat	cytosol	68.9	67.29
TraesCS7A01G163500.1	Wheat	cytosol	68.42	66.82
TraesCS7D01G165600.1	Wheat	cytosol	67.46	64.68
Solyc08g077300.2.1	Tomato	cytosol, plastid	58.37	56.48
Os06t0203500-01	Rice	mitochondrion	39.71	56.46
GSMUA_Achr10P...	Banana	cytosol	66.03	55.42
KXG19119	Sorghum	cytosol	59.81	52.52
TraesCS3D01G138500.1	Wheat	cytosol	58.85	51.25
TraesCS3A01G137600.1	Wheat	cytosol	57.89	50.42
TraesCS3B01G155300.1	Wheat	cytosol	56.94	49.58
Os06t0109600-01	Rice	cytosol, plasma membrane	57.42	49.38
Zm00001d035916_P001	Maize	cytosol	52.15	49.1
Solyc03g083610.2.1	Tomato	mitochondrion, plastid	52.15	45.99
HORVU3Hr1G026180.16	Barley	mitochondrion	55.98	39.13
HORVU7Hr1G034340.5	Barley	cytosol, nucleus, plastid	68.9	36.73
Solyc05g014980.2.1	Tomato	cytosol, extracellular, plastid	27.75	23.97
Solyc03g111200.2.1	Tomato	plastid	27.27	23.36
Solyc09g007180.2.1	Tomato	plastid	27.75	20.64
Solyc04g049690.2.1	Tomato	mitochondrion	25.84	20.07
Solyc06g065270.2.1	Tomato	plastid	27.27	19.93
Solyc03g005050.2.1	Tomato	extracellular, mitochondrion	21.05	15.55
Solyc02g093990.2.1	Tomato	mitochondrion	19.14	15.44
Solyc12g010380.1.1	Tomato	plastid	29.19	10.07

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00240+2.7.4.14	KEGG:00730+2.7.4.3	KEGG:00983+2.7.4.14	Gene3D:3.40.50.300	MapMan:6.2.3.1
InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004127
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006207	GO:GO:0006221	GO:GO:0008150	GO:GO:0008152
GO:GO:0009041	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019205	GO:GO:0046939	GO:GO:0046940	UniProt:K4AYN8	HAMAP:MF_00235	HAMAP:MF_03172
InterPro:P-loop_NTPase	PFAM:PF00406	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF150
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g088480.2	EnsemblPlants:Solyc01g088480.2.1	TIGRFAMs:TIGR01359	InterPro:UMP_CMP_kinase	UniParc:UPI000276195A

Description

UMP-CMP kinase [Source:UniProtKB/TrEMBL;Acc:K4AYN8]

Coordinates

chr1:-:83267069..83271080

Molecular Weight (calculated)

22873.4 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.277

Length

209 amino acids

Sequence
(BLAST)

001: MGTVVESANQ GAVSLPTNKK VTVIFVLGGP GSGKGTQCAN IVEHFGYTHL SAGDLLRAEI KSGSENGTMI SNMIKEGKIV PSEVTVKLLQ RAIQENGNDK
101: FLIDGFPRNE ENRAAFELVT GIEPEFVLFF DCPEAEMEKR LLGRNQGRED DNIETIKKRF NVYMESSLPV IEHYNSKGKV RKIDAVKPVG EVFEAVKAVF
201: APSNEKVAA

Best Arabidopsis Sequence Match ( AT5G26667.4 )
(BLAST)

001: MGSVDAANGS GKKPTVIFVL GGPGSGKGTQ CAYIVEHYGY THLSAGDLLR AEIKSGSENG TMIQNMIKEG KIVPSEVTIK LLQKAIQENG NDKFLIDGFP
101: RNEENRAAFE KVTEIEPKFV LFFDCPEEEM EKRLLGRNQG REDDNIETIR KRFKVFLESS LPVIHYYEAK GKVRKINAAK PIEAVFEEVK AIFSPEAEKV
201: EA

Arabidopsis Description

PYR6UMP-CMP kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UDQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.