Factsheet for Solyc03g005050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01820.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034809	Potato	extracellular	96.82	96.82
Solyc02g093990.2.1	Tomato	mitochondrion	59.36	64.86
VIT_14s0171g00160.t01	Wine grape	mitochondrion	58.3	56.9
AT3G01820.1	Thale cress	mitochondrion	51.24	55.13
CDX91924	Canola	mitochondrion	51.59	54.48
Bra000986.1-P	Field mustard	mitochondrion	50.53	54.37
CDX74321	Canola	mitochondrion	50.53	53.76
KRH06982	Soybean	mitochondrion	50.88	53.73
KRH75817	Soybean	cytosol	22.61	49.23
GSMUA_Achr11P...	Banana	mitochondrion	48.76	46.78
KRG94482	Soybean	plastid	48.76	46.62
GSMUA_Achr10P...	Banana	mitochondrion	48.76	46.62
Os08t0118900-01	Rice	mitochondrion	46.64	44.15
TraesCS7A01G315500.1	Wheat	mitochondrion	45.94	42.76
TraesCS7D01G312500.2	Wheat	mitochondrion	45.58	42.43
TraesCS7B01G216500.1	Wheat	mitochondrion	45.23	42.11
Zm00001d035124_P001	Maize	mitochondrion	43.82	42.03
EES13280	Sorghum	mitochondrion	43.82	41.75
Solyc09g007180.2.1	Tomato	plastid	35.34	35.59
Solyc04g049690.2.1	Tomato	mitochondrion	32.16	33.83
Solyc01g088480.2.1	Tomato	cytosol, plastid, unclear	15.55	21.05
Solyc08g077300.2.1	Tomato	cytosol, plastid	15.19	19.91
Solyc03g083610.2.1	Tomato	mitochondrion, plastid	15.19	18.14
Solyc05g014980.2.1	Tomato	cytosol, extracellular, plastid	15.19	17.77
Solyc03g111200.2.1	Tomato	plastid	14.49	16.8
Solyc06g065270.2.1	Tomato	plastid	16.96	16.78
Solyc12g010380.1.1	Tomato	plastid	16.61	7.76

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00730+2.7.4.3	Gene3D:3.40.50.300	MapMan:6.1.3.1	InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019205	UniProt:K4BDS9	InterPro:P-loop_NTPase	PFAM:PF00406	PRINTS:PR00094	ScanProsite:PS00113
PANTHER:PTHR23359	PANTHER:PTHR23359:SF86	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g005050.2	EnsemblPlants:Solyc03g005050.2.1	UniParc:UPI0002768E79
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:44287..46883

Molecular Weight (calculated)

31655.9 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.381

Length

283 amino acids

Sequence
(BLAST)

001: MALLSRIRAA AKPLIRTESL RSYGSAAAQL VDYDYDDYEY EEFQNRSCVM EESEGSVPRR GVQWVIMGDP MAQRHVYAQW LSKLLGVPHI SMGSLVRQEL
101: HPRSSLYKQI ADAVNQGKLV PEEVIFGLLS KRLEEGYCSG ESGFILDGIP RSKIQAEILD KTVDIDLVLN LKRAEDLVSK KDKSTGLYPP LEFLRMGASG
201: ISTSRQPEGG HFRPSSIMED VSRKNLHVHA EQVNPLEEYY RKQRKLLDFQ VAGGPGETWQ GLLAALHLQH RNAVGSTQLT AGC

Best Arabidopsis Sequence Match ( AT3G01820.1 )
(BLAST)

001: MAWLSRVRGV SPVTRLAAIR RSFGSAAALE FDYDSDDEYL YGDDRRLAEP RLGLDGSGPD RGVQWVLMGA PGAWRHVFAE RLSKLLEVPH ISMGSLVRQE
101: LNPRSSLYKE IASAVNERKL VPKSVVFALL SKRLEEGYAR GETGFILHGI PRTRFQAETL DQIAQIDLVV NLKCSEDHLV NRNETALPQQ EFLGSMLHSP
201: VAINARRESV GVYAQEVEEY YRKQRKLLDF HVGGATSADT WQGLLAALHL KQVNLTTSQK LTL

Arabidopsis Description

Probable adenylate kinase 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7W7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.