Factsheet for Solyc12g010380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58453	Canola	cytosol	37.13	73.29
VIT_11s0149g00040.t01	Wine grape	plastid	70.79	71.86
KRH37889	Soybean	plastid	69.47	70.52
KRH12898	Soybean	nucleus	68.65	68.99
Os08t0288200-01	Rice	cytosol, plasma membrane, plastid	55.78	68.56
AT5G35170.1	Thale cress	plastid	65.68	67.69
CDY41765	Canola	plastid	63.2	66.61
GSMUA_Achr4P04130_001	Banana	cytosol	60.56	66.01
Bra038939.1-P	Field mustard	plastid	55.45	65.24
KXG25051	Sorghum	plastid	62.05	63.19
TraesCS6D01G077500.1	Wheat	plastid	61.55	63.01
TraesCS6A01G083900.1	Wheat	plastid	61.55	63.01
Zm00001d050150_P001	Maize	plastid	57.59	61.34
CDY58452	Canola	plastid	28.05	59.44
HORVU6Hr1G014480.2	Barley	plastid	61.72	58.9
TraesCS6B01G113200.1	Wheat	mitochondrion	61.22	58.24
Solyc06g065270.2.1	Tomato	plastid	22.77	48.25
Solyc05g014980.2.1	Tomato	cytosol, extracellular, plastid	13.7	34.3
Solyc03g111200.2.1	Tomato	plastid	13.37	33.2
Solyc01g088480.2.1	Tomato	cytosol, plastid, unclear	10.07	29.19
Solyc09g007180.2.1	Tomato	plastid	12.87	27.76
Solyc08g077300.2.1	Tomato	cytosol, plastid	9.57	26.85
Solyc04g049690.2.1	Tomato	mitochondrion	11.72	26.39
Solyc03g083610.2.1	Tomato	mitochondrion, plastid	9.08	23.21
Solyc02g093990.2.1	Tomato	mitochondrion	7.59	17.76
Solyc03g005050.2.1	Tomato	extracellular, mitochondrion	7.76	16.61

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00730+2.7.4.3	Gene3D:3.40.50.300	MapMan:6.1.3.1	InterPro:Adenyl_kin_sub	InterPro:Adenylat/UMP-CMP_kin
InterPro:Adenylat_kinase_CS	ncoils:Coil	InterPro:DUF1995	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004017	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016776	GO:GO:0019205
GO:GO:0046939	GO:GO:0046940	UniProt:K4DCC5	HAMAP:MF_00235	InterPro:P-loop_NTPase	PFAM:PF00406
PFAM:PF09353	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF72	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc12g010380.1	EnsemblPlants:Solyc12g010380.1.1	TIGRFAMs:TIGR01351	UniParc:UPI0002769E56	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:3429721..3438938

Molecular Weight (calculated)

67460.1 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.329

Length

606 amino acids

Sequence
(BLAST)

001: MAMIASVTMN FPHISTHNIS SNQTFSPICT NNPSNFSSSS SSSIPISSNS IRLSSSIAYS EQLIASHNVN RRTKNRKIKV ISARSEPLKV MISGAPASGK
101: GTQCELIVQK FGLVHISTGD LLRAELSAGT DIGNKAKEYM NAGRLVPDEI VTAMVTTRLS KEDAKEKGWL LDGYPRTLAQ AESLERLNIR PDIYIVLDVP
201: DAILIDRCVG RRLDPLTGKI YHVTNFPPET EDIKARLITR PDDTEEKVKS RLQIYKQNAE AILPVYSDIM NKIDGNRGKD SVFAEIDSLL SRVQKEEQDA
301: RKSEESAISS TRADMASLSK DWRGIPTRLN NIPHSREIRE YFYTDVLQAT QRAVNDGKTR LKIEINIPEL NPSMDVYRIG TLMELIRVLA LSFADDGKRV
401: KVCVQGSMGE GALAGMPLQL AGSRKILEYM DWGDYGALGN FINIGSIGGK EVEKQDDVFI LVAPQNAVGN CIIDDMRAMT DAAGNRPIIL VNPKLKDLPA
501: SSGIMQTMGR DKRLEYAALF EICYQFRLLY YAGTQYPIMG ALRMSYPYPY ELYKRVDESP GKEKYISLAT FAKRPSIDEM NDAFEGKSRN QEKKAEGFWG
601: FLSGIL

Best Arabidopsis Sequence Match ( AT5G35170.1 )
(BLAST)

001: MASLSLSSAH FSSTSSSSRS SISTSSLSPS STSLPLLQSP IRRRYRSLRR RLSFSVIPRR TSRSFSTSNS QIRCSINEPL KVMISGAPAS GKGTQCELIV
101: HKFGLVHIST GDLLRAEVSS GTDIGKRAKE FMNSGSLVPD EIVIAMVAGR LSREDAKEHG WLLDGFPRSF AQAQSLDKLN VKPDIFILLD VPDEILIDRC
201: VGRRLDPVTG KIYHIKNYPP ESDEIKARLV TRPDDTEEKV KARLQIYKQN SEAIISAYSD VMVKIDANRP KEVVFEETQT LLSQIQLKRM IKTDKASPVQ
301: DKWRGIPTRL NNIPHSRDIR AYFYEDVLQA TIRSIKDGNT RLRVDINIPE LNPEMDVYRI GTLMELVQAL ALSFADDGKR VKVCVQGSMG EGALAGMPLQ
401: LAGTRKILEY MDWGDDETLG TFVKLGAIGG KEVDEEDDMF ILVAPQNAVG NCIIDDLQAM TTAAGKRPVV LINPRLKDLP ASSGIMQTMG REQRLEYALT
501: FDNCYVFRLL YYLGTQYPIM GALRMSYPYR YELYKRVNEE NGKEKYVLLA TYAERPTPEQ IDDAFSGKSR DQSKKASGIW GFLSSVFS

Arabidopsis Description

Adenylate kinase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VYL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.