CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37889	Soybean	plastid	93.37	94.3
CDY58453	Canola	cytosol	37.65	73.94
VIT_11s0149g00040.t01	Wine grape	plastid	72.97	73.7
Solyc12g010380.1.1	Tomato	plastid	68.99	68.65
Os08t0288200-01	Rice	cytosol, plasma membrane, plastid	56.05	68.56
AT5G35170.1	Thale cress	plastid	65.67	67.35
CDY41765	Canola	plastid	64.01	67.13
Bra038939.1-P	Field mustard	plastid	57.05	66.8
GSMUA_Achr4P04130_001	Banana	cytosol	60.7	65.83
TraesCS6A01G083900.1	Wheat	plastid	62.35	63.51
TraesCS6D01G077500.1	Wheat	plastid	62.19	63.34
KXG25051	Sorghum	plastid	62.02	62.86
Zm00001d050150_P001	Maize	plastid	57.71	61.16
CDY58452	Canola	plastid	28.19	59.44
HORVU6Hr1G014480.2	Barley	plastid	62.02	58.9
TraesCS6B01G113200.1	Wheat	mitochondrion	61.03	57.77
KRH40035	Soybean	plastid	22.55	47.89
KRH54210	Soybean	cytosol	11.77	35.32
KRH57207	Soybean	cytosol	14.1	35.12
KRH57209	Soybean	endoplasmic reticulum, nucleus	14.1	35.12
KRH03924	Soybean	cytosol, nucleus	14.1	35.12
KRH71729	Soybean	cytosol	5.31	32.65
KRH48911	Soybean	nucleus	10.28	26.27
KRG95905	Soybean	mitochondrion	11.28	25.56
KRH67625	Soybean	mitochondrion	11.28	25.47
KRH66383	Soybean	cytosol, endoplasmic reticulum	9.78	25.0
KRH19788	Soybean	mitochondrion	11.28	23.86
KRH32380	Soybean	mitochondrion	11.28	23.86
KRH39992	Soybean	mitochondrion	8.79	22.94
KRH23793	Soybean	mitochondrion	8.96	22.88
KRH08202	Soybean	extracellular	5.64	20.24
KRH75817	Soybean	cytosol	3.65	16.92
KRH06982	Soybean	mitochondrion	6.3	14.18
KRG94482	Soybean	plastid	6.8	13.85

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00730+2.7.4.3	EntrezGene:100818830	Gene3D:3.40.50.300	MapMan:6.1.3.1	EMBL:ACUP02009424
InterPro:ADK_active_lid_dom_sf	InterPro:Adenyl_kin_sub	InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	ncoils:Coil	InterPro:DUF1995
EnsemblPlantsGene:GLYMA_15G203100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004017	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0016776	GO:GO:0019205	GO:GO:0046939
GO:GO:0046940	UniProt:I1MI09	EnsemblPlants:KRH12898	ProteinID:KRH12898	ProteinID:KRH12898.1	HAMAP:MF_00235
InterPro:P-loop_NTPase	PFAM:PF00406	PFAM:PF09353	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359
PANTHER:PTHR23359:SF72	MetaCyc:PWY-7219	SUPFAM:SSF52540	SUPFAM:SSF57774	TIGRFAMs:TIGR01351	UniParc:UPI00029671DB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:25793466..25802415

Molecular Weight (calculated)

67399.0 Da

IEP (calculated)

8.766

GRAVY (calculated)

-0.390

Length

603 amino acids

Sequence
(BLAST)

001: MQQKMLNSTP TCFHRTTTLT PSPSLLSTPL PSCSSSSTHH HSYLHPRHSS FHTQPLRLSN LRYHTHLPST PKTLKVNCST SEPLKVMISG APASGKGTQC
101: ELIVQKFGLV HISTGDLLRA EVAAGTEIGN KAKEFMNTGQ LVPDEIVTAM VAARLAREDV RHKGWLLDGY PRSFGQAQSL EKMQIRPDVY IVLDVPDEIL
201: IDRCVGRRLD PVTGKIYHLK FFPPDTEEIK ARLITRPDDT EEKVKSRLNI YKQNAEAASS SYSSITHKID GSHSKEAVFK EIESLLSQLQ QDKVKIIESG
301: EKPIPDTKKG RTSLSQDKWR GIPTRLNNIP HSREIRKYFY DDVLQATQRA ISDGKTRVKV DINIPELNPE MDVYRIGTLM ELVRALALSF ADDGKRVKVC
401: VQGSMGEGAL AGMPLQLAGT RKILEFMDWG DYGAKGTFIN IGSIGAAEVE EQDDMFILVA PQNAVGNCII DDLRAMTNAA EHRPVILINA RLKDLPGSSG
501: IMQTIGRDQR LKYAASFESC YFFRLLYYAG TQYPIMGAIR MTYPYQYDLY KRVDESPGKE KYVILSTFPE RPTTDEINDA FQGKPSKDPR KTSGIWGFLS
601: GIL

Best Arabidopsis Sequence Match ( AT5G35170.1 )
(BLAST)

001: MASLSLSSAH FSSTSSSSRS SISTSSLSPS STSLPLLQSP IRRRYRSLRR RLSFSVIPRR TSRSFSTSNS QIRCSINEPL KVMISGAPAS GKGTQCELIV
101: HKFGLVHIST GDLLRAEVSS GTDIGKRAKE FMNSGSLVPD EIVIAMVAGR LSREDAKEHG WLLDGFPRSF AQAQSLDKLN VKPDIFILLD VPDEILIDRC
201: VGRRLDPVTG KIYHIKNYPP ESDEIKARLV TRPDDTEEKV KARLQIYKQN SEAIISAYSD VMVKIDANRP KEVVFEETQT LLSQIQLKRM IKTDKASPVQ
301: DKWRGIPTRL NNIPHSRDIR AYFYEDVLQA TIRSIKDGNT RLRVDINIPE LNPEMDVYRI GTLMELVQAL ALSFADDGKR VKVCVQGSMG EGALAGMPLQ
401: LAGTRKILEY MDWGDDETLG TFVKLGAIGG KEVDEEDDMF ILVAPQNAVG NCIIDDLQAM TTAAGKRPVV LINPRLKDLP ASSGIMQTMG REQRLEYALT
501: FDNCYVFRLL YYLGTQYPIM GALRMSYPYR YELYKRVNEE NGKEKYVLLA TYAERPTPEQ IDDAFSGKSR DQSKKASGIW GFLSSVFS

Arabidopsis Description

Adenylate kinase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VYL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.