CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57209	Soybean	endoplasmic reticulum, nucleus	97.52	97.52
KRH57207	Soybean	cytosol	97.52	97.52
KRH71729	Soybean	cytosol	38.02	93.88
VIT_17s0000g01730.t01	Wine grape	cytosol	88.84	87.76
Os12t0236400-01	Rice	mitochondrion	87.19	87.55
GSMUA_Achr10P...	Banana	cytosol	87.6	86.53
GSMUA_Achr6P12440_001	Banana	cytosol	85.54	86.25
AT5G63400.1	Thale cress	cytosol	79.75	78.46
CDY41515	Canola	cytosol	77.69	78.33
CDY48140	Canola	cytosol	77.27	77.92
CDX84406	Canola	cytosol	77.27	77.92
Bra038628.1-P	Field mustard	cytosol	77.27	77.92
KRH54210	Soybean	cytosol	64.46	77.61
CDY16727	Canola	cytosol	76.86	77.5
Bra035847.1-P	Field mustard	cytosol	76.86	77.5
Bra000623.1-P	Field mustard	cytosol	77.27	76.33
CDX83159	Canola	cytosol	77.27	76.33
CDY34035	Canola	cytosol	76.86	75.92
AT5G50370.1	Thale cress	cytosol	77.27	75.4
KRH75817	Soybean	cytosol	14.05	26.15
KRH40035	Soybean	plastid	30.58	26.06
KRG95905	Soybean	mitochondrion	26.86	24.44
KRH23793	Soybean	mitochondrion	23.55	24.15
KRH67625	Soybean	mitochondrion	26.45	23.97
KRH32380	Soybean	mitochondrion	28.1	23.86
KRH39992	Soybean	mitochondrion	22.73	23.81
KRH19788	Soybean	mitochondrion	27.69	23.51
KRH48911	Soybean	nucleus	21.49	22.03
KRH66383	Soybean	cytosol, endoplasmic reticulum	21.49	22.03
KRH08202	Soybean	extracellular	12.4	17.86
KRH06982	Soybean	mitochondrion	16.53	14.93
KRH12898	Soybean	nucleus	35.12	14.1
KRH37889	Soybean	plastid	34.71	14.07
KRG94482	Soybean	plastid	16.12	13.18

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00730+2.7.4.3	EntrezGene:100814972	Gene3D:3.40.50.300	MapMan:6.1.3.1	UniProt:A0A0R0FND9
EMBL:ACUP02010369	InterPro:Adenyl_kin_sub	InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	InterPro:Adenylate_kinase_lid-dom	EnsemblPlantsGene:GLYMA_17G128300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004017	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0016776	GO:GO:0019205	GO:GO:0046939	GO:GO:0046940
EnsemblPlants:KRH03924	ProteinID:KRH03924	ProteinID:KRH03924.1	HAMAP:MF_00235	InterPro:P-loop_NTPase	PFAM:PF00406
PFAM:PF05191	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF22	MetaCyc:PWY-7219
SUPFAM:SSF52540	TIGRFAMs:TIGR01351	UniParc:UPI0001D166C9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:10256587..10259674

Molecular Weight (calculated)

26642.5 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.268

Length

242 amino acids

Sequence
(BLAST)

001: MANTNLDDVP SLDLMTELLR RFKCSSKPDK RLILIGPPGS GKGTQSPIIK DEYCLCHLAT GDMLRAAVAA KTPLGVKAKE AMNKGELVSD DLVVGIIDEA
101: MKKPSCQKGF ILDGFPRTVV QAQKLDEMLQ NQGVKVDKVL NFAIDDAILE ERITGRWIHP SSGRTYHTKF APPKVLGVDD VTGEPLIQRK DDTAAVLKLR
201: LEAFHKQTEP VIDYYSKKGL VANLHAEKPP KEVTVEVEKV LS

Best Arabidopsis Sequence Match ( AT5G63400.1 )
(BLAST)

001: MATGGAAADL EDVQTVDLMS ELLRRLKCSQ KPDKRLIFIG PPGSGKGTQS PVVKDEYCLC HLSTGDMLRA AVASKTPLGV KAKEAMEKGE LVSDDLVVGI
101: IDEAMNKPKC QKGFILDGFP RTVTQAEKLD EMLKRRGTEI DKVLNFAIDD AILEERITGR WIHPSSGRSY HTKFAPPKTP GVDDITGEPL IQRKDDNADV
201: LKSRLAAFHS QTQPVIDYYA KKAVLTNIQA EKAPQEVTSE VKKALS

Arabidopsis Description

ADK1ADK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.