CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26667.1	KRH22653	AT5G22290.1	21798944
AT5G26667.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48911	Soybean	nucleus	97.88	97.88
CDY19768	Canola	cytosol	74.15	83.73
CDX87049	Canola	cytosol	74.15	83.73
Bra036580.1-P	Field mustard	cytosol	73.73	83.25
AT5G26667.1	Thale cress	cytosol	72.88	82.69
Bra020536.1-P	Field mustard	cytosol	74.15	81.78
CDY05528	Canola	cytosol	74.15	81.4
CDY65143	Canola	cytosol	74.15	81.4
PGSC0003DMT400004310	Potato	cytosol	70.76	79.9
GSMUA_Achr4P11630_001	Banana	cytosol	70.34	79.81
GSMUA_Achr4P12240_001	Banana	cytosol	68.64	79.02
Solyc01g088480.2.1	Tomato	cytosol, plastid, unclear	69.92	78.95
VIT_15s0045g01310.t01	Wine grape	cytosol	69.92	78.57
EES14324	Sorghum	cytosol	69.07	76.89
Os07t0624700-01	Rice	cytosol, extracellular	68.22	76.67
Os02t0778400-01	Rice	cytosol	69.49	76.64
CDX87047	Canola	cytosol	23.31	76.39
TraesCS2B01G187300.1	Wheat	cytosol	68.64	76.06
TraesCS2D01G168400.1	Wheat	cytosol	68.64	76.06
TraesCS2A01G161300.1	Wheat	cytosol	66.53	75.85
Bra009898.1-P	Field mustard	cytosol	74.15	75.76
EES05888	Sorghum	cytosol	67.8	75.12
CDY61106	Canola	cytosol	74.15	75.11
GSMUA_Achr3P27510_001	Banana	cytosol	67.37	75.0
AT3G60180.1	Thale cress	cytosol	62.29	72.06
CDX80561	Canola	cytosol	74.58	71.84
AT3G60961.1	Thale cress	cytosol	41.1	71.32
HORVU2Hr1G029350.10	Barley	endoplasmic reticulum	67.37	70.98
Zm00001d018277_P002	Maize	cytosol	66.53	69.16
TraesCS7B01G069300.1	Wheat	cytosol	62.71	69.16
CDY41189	Canola	cytosol	59.75	68.78
TraesCS7A01G163500.1	Wheat	cytosol	62.29	68.69
Zm00001d052108_P003	Maize	cytosol	67.37	68.53
TraesCS7D01G165600.1	Wheat	cytosol	61.86	66.97
CDX71833	Canola	cytosol	38.98	63.89
Bra007512.1-P	Field mustard	cytosol	55.93	63.46
KXG19119	Sorghum	cytosol	57.2	56.72
GSMUA_Achr10P...	Banana	cytosol	59.32	56.22
Os06t0203500-01	Rice	mitochondrion	34.32	55.1
TraesCS3D01G138500.1	Wheat	cytosol	54.24	53.33
TraesCS3A01G137600.1	Wheat	cytosol	54.24	53.33
Os06t0109600-01	Rice	cytosol, plasma membrane	54.66	53.09
TraesCS3B01G155300.1	Wheat	cytosol	53.39	52.5
Zm00001d035916_P001	Maize	cytosol	47.88	50.9
KRH39992	Soybean	mitochondrion	48.73	49.78
KRH23793	Soybean	mitochondrion	49.58	49.58
HORVU3Hr1G026180.16	Barley	mitochondrion	52.97	41.81
HORVU7Hr1G034340.5	Barley	cytosol, nucleus, plastid	63.14	38.01
KRH57209	Soybean	endoplasmic reticulum, nucleus	22.03	21.49
KRH57207	Soybean	cytosol	22.03	21.49
KRH03924	Soybean	cytosol, nucleus	22.03	21.49
KRG95905	Soybean	mitochondrion	23.31	20.68
KRH40035	Soybean	plastid	24.58	20.42
KRH67625	Soybean	mitochondrion	22.88	20.22
KRH54210	Soybean	cytosol	16.95	19.9
KRH19788	Soybean	mitochondrion	22.88	18.95
KRH32380	Soybean	mitochondrion	22.03	18.25
KRH71729	Soybean	cytosol	6.36	15.31
KRH06982	Soybean	mitochondrion	17.37	15.3
KRH75817	Soybean	cytosol	8.05	14.62
KRG94482	Soybean	plastid	16.53	13.18
KRH08202	Soybean	extracellular	9.32	13.1
KRH37889	Soybean	plastid	25.0	9.88
KRH12898	Soybean	nucleus	25.0	9.78

Protein Annotations

KEGG:00230+2.7.4.3	KEGG:00240+2.7.4.14	KEGG:00730+2.7.4.3	KEGG:00983+2.7.4.14	EntrezGene:100500111	Gene3D:3.40.50.300
MapMan:6.2.3.1	EMBL:ACUP02001950	InterPro:Adenylat/UMP-CMP_kin	InterPro:Adenylat_kinase_CS	EnsemblPlantsGene:GLYMA_03G102700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004127	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006207
GO:GO:0006221	GO:GO:0008150	GO:GO:0008152	GO:GO:0009041	GO:GO:0009058	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019205	GO:GO:0046939	GO:GO:0046940
UniProt:I1JMI6	EnsemblPlants:KRH66383	ProteinID:KRH66383	ProteinID:KRH66383.1	HAMAP:MF_00235	HAMAP:MF_03172
InterPro:P-loop_NTPase	PFAM:PF00406	PRINTS:PR00094	ScanProsite:PS00113	PANTHER:PTHR23359	PANTHER:PTHR23359:SF150
MetaCyc:PWY-7176	MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01359	InterPro:UMP_CMP_kinase	UniParc:UPI00023C0DDD

Description

hypothetical protein

Coordinates

chr3:+:29504398..29509264

Molecular Weight (calculated)

26517.0 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.411

Length

236 amino acids

Sequence
(BLAST)

001: MGTVEAANKD ANGSLLEKNP TVVFVLGGPG SGKGTQCANI VENFGYTHLS AGDLLRAEIK SGSENGTMIQ NMIKEGKIVP SEVTIKLLQK AMQESGNDKF
101: LIDGFPRNEE NRAAFEKVTG IEPAFVLFFE CPEEEMERRL LSRNQGREDD NIETIRKRFK VFLESSLPVI NYYDAKGKVR KIDAARPIEE VFETVKGIFG
201: PKNEKVNHYV RLMSKLYMYK FHFVSKTKIG NHCLPC

Best Arabidopsis Sequence Match ( AT3G60180.2 )
(BLAST)

001: METPIDAPNK DEHECPRWKK STVVFVLGGP GSGKGTQCAN VVKHFSYTHF SAGDLLRAEI KSGSEFGAMI QSMIAEGRIV PSEITVKLLC KAMEESGNDK
101: FLIDGFPRNE ENRNVFENVA RIEPAFVLFF DCPEEELERR IMSRNQGRED DNIETIKKRF KVFVESTLPI ISYYESKGKL RKINAAKSSE EVFEAVRVLF
201: ASET

Arabidopsis Description

UMK1Probable UMP-CMP kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.