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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plasma membrane

Predictor Summary:
  • plastid 2
  • extracellular 3
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 3
  • vacuole 3
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:golgi
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX96591 endoplasmic reticulum
CDY04628 endoplasmic reticulum
CDY50241 endoplasmic reticulum
CDY67972 endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G21460.1 CDX96591 AT1G21460.1 24027245
AT1G21460.1 CDY04628 AT1G21460.1 24027245
AT1G21460.1 CDY50241 AT1G21460.1 24027245
AT1G21460.1 CDY67972 AT1G21460.1 24027245
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016421.1-P Field mustard golgi, plasma membrane 99.2 99.2
CDX96591 Canola golgi, plasma membrane 99.2 99.2
CDY50241 Canola extracellular, golgi, plasma membrane 91.63 93.5
CDY04628 Canola extracellular, golgi 91.63 93.5
AT1G21460.1 Thale cress extracellular, golgi, plasma membrane 90.44 91.9
KRH64557 Soybean extracellular, golgi 70.12 71.26
VIT_18s0001g15330.t01 Wine grape golgi, plasma membrane 70.12 70.97
Solyc04g064610.2.1 Tomato plasma membrane 68.92 70.33
PGSC0003DMT400063855 Potato plasma membrane 69.32 68.77
KRH53378 Soybean golgi, plasma membrane 70.52 68.6
Solyc04g064620.2.1 Tomato extracellular, golgi, plasma membrane 66.93 68.57
KRH18105 Soybean plasma membrane 67.33 68.15
KRH15935 Soybean plasma membrane 68.53 67.72
Zm00001d038226_P001 Maize golgi, plasma membrane, vacuole 61.75 62.0
EES19554 Sorghum golgi, plasma membrane 62.55 61.33
GSMUA_Achr11P... Banana golgi, plasma membrane 60.56 61.04
Os05t0426000-01 Rice plasma membrane 62.95 60.54
PGSC0003DMT400035874 Potato golgi, plasma membrane 47.81 60.3
PGSC0003DMT400063850 Potato plasma membrane 67.33 59.93
TraesCS1D01G265400.1 Wheat golgi, plasma membrane, vacuole 62.15 59.77
TraesCS1B01G276000.1 Wheat golgi, plasma membrane, vacuole 61.75 59.39
TraesCS1A01G265200.1 Wheat golgi, plasma membrane, vacuole 61.75 59.16
GSMUA_Achr5P01260_001 Banana golgi, plasma membrane 60.56 59.14
PGSC0003DMT400095936 Potato golgi, plasma membrane 54.18 58.37
KXG33819 Sorghum extracellular, golgi 62.15 57.99
TraesCS3D01G403300.1 Wheat plasma membrane 61.75 57.62
TraesCS3A01G408200.1 Wheat golgi, plasma membrane 62.15 57.56
Os01t0881300-02 Rice plasma membrane 62.15 57.14
TraesCS3B01G441800.1 Wheat golgi, plasma membrane 61.75 56.57
Zm00001d000222_P001 Maize plasma membrane 60.16 56.55
Solyc06g060590.2.1 Tomato plasma membrane 57.37 56.25
PGSC0003DMT400035873 Potato plasma membrane 56.57 55.47
Solyc06g060580.1.1 Tomato golgi, plasma membrane 55.38 55.38
Solyc04g064640.2.1 Tomato endoplasmic reticulum, golgi 52.99 54.51
Solyc04g064630.2.1 Tomato golgi, plasma membrane 51.39 51.6
HORVU3Hr1G091230.10 Barley plasma membrane 55.38 47.6
CDY05123 Canola plasma membrane 39.84 45.87
CDX90787 Canola plasma membrane 39.44 45.41
CDY16757 Canola extracellular, peroxisome, plasma membrane 40.64 42.5
CDY40867 Canola plasma membrane 41.43 41.77
CDX86834 Canola plasma membrane 41.43 41.77
CDY56741 Canola plasma membrane 39.84 41.67
CDY45751 Canola extracellular, golgi, plasma membrane 39.04 40.83
CDY30733 Canola extracellular, golgi, plasma membrane 39.04 40.83
CDY49756 Canola plasma membrane 39.84 40.82
CDY27020 Canola golgi, plasma membrane 41.04 39.77
CDY04003 Canola plasma membrane 39.04 39.68
CDX96199 Canola golgi, plasma membrane 40.64 39.53
CDY36831 Canola plasma membrane 37.45 39.5
CDY20083 Canola plasma membrane 37.05 39.41
CDY30734 Canola plasma membrane 37.45 39.17
CDX97600 Canola plasma membrane 36.65 38.98
CDX98492 Canola plasma membrane 36.65 38.98
CDY14399 Canola mitochondrion 34.26 38.91
CDY61492 Canola golgi, plasma membrane 35.86 38.79
CDY32341 Canola plasma membrane 36.26 38.56
CDY69440 Canola plasma membrane 32.67 38.32
CDY44578 Canola plasma membrane 36.26 38.24
CDY09729 Canola golgi, plasma membrane, vacuole 36.26 37.92
CDY34967 Canola plasma membrane 34.66 37.66
CDX75890 Canola plasma membrane 34.26 37.23
CDX90555 Canola golgi, plasma membrane, vacuole 35.46 37.08
CDX82395 Canola plasma membrane 33.86 36.8
CDY24920 Canola extracellular, golgi, vacuole 22.71 36.77
CDX84358 Canola plasma membrane 29.88 35.89
CDY25828 Canola mitochondrion, plasma membrane 23.51 33.71
CDX86454 Canola plasma membrane, plastid 39.84 33.67
CDY24854 Canola golgi, plasma membrane 35.86 33.21
CDY44448 Canola plasma membrane, plastid 39.84 33.11
CDX92666 Canola golgi, plasma membrane 35.06 32.23
CDY03395 Canola endoplasmic reticulum, golgi, plasma membrane 35.06 32.23
CDY34333 Canola golgi, plasma membrane 35.06 32.23
CDY11047 Canola golgi, plasma membrane 35.06 32.23
CDY05819 Canola golgi, plasma membrane 36.65 31.29
CDX77928 Canola plasma membrane 35.46 31.23
CDX71659 Canola golgi, plasma membrane 36.65 31.19
CDX83046 Canola plasma membrane 35.46 31.12
CDY53626 Canola plasma membrane 35.86 30.93
CDY05867 Canola plasma membrane 35.46 30.8
CDY08093 Canola plasma membrane 35.46 30.8
CDX68492 Canola plasma membrane 35.06 30.77
CDX87161 Canola endoplasmic reticulum 33.86 30.69
CDX84877 Canola golgi, plasma membrane 33.07 30.51
CDX78511 Canola plasma membrane 35.46 30.48
CDY16863 Canola endoplasmic reticulum, plasma membrane 33.47 30.32
CDX88041 Canola plasma membrane 34.66 30.21
CDX80379 Canola plasma membrane 34.66 30.21
CDX85668 Canola endoplasmic reticulum, golgi, plasma membrane 35.46 29.97
CDX91144 Canola plasma membrane 35.46 29.97
CDX69663 Canola golgi, plasma membrane 35.46 29.87
CDX97233 Canola golgi, plasma membrane 35.06 29.53
CDY08964 Canola plastid 33.86 29.51
CDX73521 Canola golgi, mitochondrion, plasma membrane, plastid 30.28 28.68
CDY07676 Canola golgi, plasma membrane 29.88 28.2
CDY45750 Canola cytosol, golgi, plasma membrane 31.47 27.34
Protein Annotations
Gene3D:1.20.1280.290MapMan:24.2.6.1GO:A0A078JRB8UniProt:A0A078JRB8EnsemblPlants:CDY67972ProteinID:CDY67972
ProteinID:CDY67972.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006810GO:GO:0008150GO:GO:0008643GO:GO:0016020GO:GO:0016021GO:GO:0034219
GO:GO:0051119EnsemblPlantsGene:GSBRNA2T00068358001PFAM:PF03083PANTHER:PTHR10791PANTHER:PTHR10791:SF44InterPro:SWEET1
InterPro:SWEET_sugar_transprTMHMM:TMhelixUniParc:UPI0004EE83FCSEG:seg::
Description
BnaCnng57120DBidirectional sugar transporter SWEET [Source:UniProtKB/TrEMBL;Acc:A0A078JRB8]
Coordinates
chrLK036712:+:2482..3992
Molecular Weight (calculated)
27806.4 Da
IEP (calculated)
9.470
GRAVY (calculated)
0.439
Length
251 amino acids
Sequence
(BLAST)
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAAIE TIYVLIFLFY APRKEKAKIF
101: AIFAAVLAVF ATVALVSLFA LHGNGRKLFC GIAATVFSII MYASPLSIMR LVVKTKSVEY MPFFLSLFVF LCGTSWFIYG LIGRDPFVAI PNGFGCALGT
201: VQLILYFIYC GNKGDKSTDD AEKDEKKTVE MKDEEKKKQN VVNGKQQEQQ V
Best Arabidopsis Sequence Match ( AT1G21460.1 )
(BLAST)
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
Arabidopsis Description
SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [extracellular,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.