Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400035873 | endoplasmic reticulum |
| PGSC0003DMT400035874 | endoplasmic reticulum |
| PGSC0003DMT400063850 | endoplasmic reticulum |
| PGSC0003DMT400063855 | endoplasmic reticulum |
| PGSC0003DMT400095936 | endoplasmic reticulum |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g064610.2.1 | Tomato | plasma membrane | 94.07 | 96.75 |
| Bra017916.1-P | Field mustard | extracellular, golgi | 69.17 | 71.14 |
| CDY04628 | Canola | extracellular, golgi | 69.17 | 71.14 |
| KRH64557 | Soybean | extracellular, golgi | 69.17 | 70.85 |
| CDY50241 | Canola | extracellular, golgi, plasma membrane | 68.77 | 70.73 |
| VIT_18s0001g15330.t01 | Wine grape | golgi, plasma membrane | 69.17 | 70.56 |
| Bra016421.1-P | Field mustard | golgi, plasma membrane | 68.77 | 69.32 |
| CDX96591 | Canola | golgi, plasma membrane | 68.77 | 69.32 |
| CDY67972 | Canola | golgi, plasma membrane | 68.77 | 69.32 |
| AT1G21460.1 | Thale cress | extracellular, golgi, plasma membrane | 67.59 | 69.23 |
| KRH53378 | Soybean | golgi, plasma membrane | 68.77 | 67.44 |
| KRH18105 | Soybean | plasma membrane | 64.43 | 65.73 |
| KRH15935 | Soybean | plasma membrane | 65.61 | 65.35 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane | 61.66 | 62.65 |
| PGSC0003DMT400063850 | Potato | plasma membrane | 66.8 | 59.93 |
| PGSC0003DMT400035873 | Potato | plasma membrane | 60.47 | 59.77 |
| Zm00001d038226_P001 | Maize | golgi, plasma membrane, vacuole | 57.71 | 58.4 |
| EES19554 | Sorghum | golgi, plasma membrane | 58.89 | 58.2 |
| PGSC0003DMT400035874 | Potato | golgi, plasma membrane | 45.45 | 57.79 |
| TraesCS1A01G265200.1 | Wheat | golgi, plasma membrane, vacuole | 58.89 | 56.87 |
| TraesCS1B01G276000.1 | Wheat | golgi, plasma membrane, vacuole | 58.5 | 56.7 |
| TraesCS1D01G265400.1 | Wheat | golgi, plasma membrane, vacuole | 58.5 | 56.7 |
| PGSC0003DMT400095936 | Potato | golgi, plasma membrane | 52.17 | 56.65 |
| GSMUA_Achr5P01260_001 | Banana | golgi, plasma membrane | 57.31 | 56.42 |
| Zm00001d000222_P001 | Maize | plasma membrane | 59.29 | 56.18 |
| Os01t0881300-02 | Rice | plasma membrane | 60.47 | 56.04 |
| Os05t0426000-01 | Rice | plasma membrane | 57.71 | 55.94 |
| KXG33819 | Sorghum | extracellular, golgi | 58.89 | 55.39 |
| TraesCS3D01G403300.1 | Wheat | plasma membrane | 58.5 | 55.02 |
| TraesCS3A01G408200.1 | Wheat | golgi, plasma membrane | 58.1 | 54.24 |
| TraesCS3B01G441800.1 | Wheat | golgi, plasma membrane | 58.5 | 54.01 |
| HORVU3Hr1G091230.10 | Barley | plasma membrane | 52.57 | 45.55 |
| PGSC0003DMT400018642 | Potato | extracellular | 41.5 | 45.26 |
| PGSC0003DMT400018258 | Potato | plasma membrane | 35.18 | 43.84 |
| PGSC0003DMT400069697 | Potato | cytosol, golgi, plasma membrane | 38.34 | 40.76 |
| PGSC0003DMT400063714 | Potato | plasma membrane | 36.36 | 38.82 |
| PGSC0003DMT400001425 | Potato | golgi, plasma membrane | 27.27 | 38.12 |
| PGSC0003DMT400031634 | Potato | golgi, plasma membrane | 26.88 | 35.23 |
| PGSC0003DMT400011076 | Potato | golgi, mitochondrion, plasma membrane, plastid | 26.88 | 34.17 |
| PGSC0003DMT400023436 | Potato | golgi, plasma membrane | 20.95 | 33.76 |
| PGSC0003DMT400011081 | Potato | plasma membrane | 33.6 | 33.6 |
| PGSC0003DMT400063717 | Potato | golgi, plasma membrane | 37.94 | 32.99 |
| PGSC0003DMT400081212 | Potato | golgi, plasma membrane | 36.76 | 32.52 |
| PGSC0003DMT400093003 | Potato | golgi, plasma membrane | 19.37 | 32.24 |
| PGSC0003DMT400082699 | Potato | extracellular, plasma membrane | 16.21 | 31.54 |
| PGSC0003DMT400081210 | Potato | golgi, plasma membrane | 36.76 | 31.42 |
| PGSC0003DMT400081211 | Potato | golgi, plasma membrane | 35.97 | 30.74 |
| PGSC0003DMT400083992 | Potato | golgi, plasma membrane | 36.36 | 30.67 |
| PGSC0003DMT400029520 | Potato | golgi, plasma membrane | 33.2 | 29.27 |
| PGSC0003DMT400081206 | Potato | golgi, plasma membrane | 32.81 | 28.33 |
| PGSC0003DMT400021966 | Potato | mitochondrion | 19.37 | 24.5 |
Protein Annotations
| Gene3D:1.20.1280.290 | EntrezGene:102600613 | MapMan:24.2.6.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008643 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034219 | GO:GO:0051119 | EMBL:KU686963 | UniProt:M1CBD6 |
| PFAM:PF03083 | EnsemblPlantsGene:PGSC0003DMG400024819 | PGSC:PGSC0003DMG400024819 | EnsemblPlants:PGSC0003DMT400063855 | PANTHER:PTHR10791 | PANTHER:PTHR10791:SF44 |
| InterPro:SWEET1 | InterPro:SWEET_sugar_transpr | TMHMM:TMhelix | UniParc:UPI00029496C1 | RefSeq:XP_006356306.1 | SEG:seg |
Description
Nodulin MtN3 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024819]
Coordinates
chr4:-:58116719..58118846
Molecular Weight (calculated)
27792.7 Da
IEP (calculated)
10.113
GRAVY (calculated)
0.658
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVVHTLHFV FGIFGNATAL FLFLAPIITF KRVIQNRSTE QFSGLPYVMT LLNCLLSAWY GLPFVSPNNL LVSTINGTGA VIETIYVLIF IAFAPSKEKK
101: KISALLLLVL TVFAAVALVS MLALHGSKRK LFCGIAATIF SIIMYGSPLS IIRLVIKTKS VEFMPFFLSL FVFLCGASWF AFGLLGKDPF VAIPNGFGFG
201: LGTVQLILYA IYCEKKGFTK KSTFDESLTT GNVKSHQEEK QSSNNNKSKL EQV
101: KISALLLLVL TVFAAVALVS MLALHGSKRK LFCGIAATIF SIIMYGSPLS IIRLVIKTKS VEFMPFFLSL FVFLCGASWF AFGLLGKDPF VAIPNGFGFG
201: LGTVQLILYA IYCEKKGFTK KSTFDESLTT GNVKSHQEEK QSSNNNKSKL EQV
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
Arabidopsis Description
SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [plasma membrane,golgi,extracellular]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.