Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular

Predictor Summary:
  • plastid 2
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:golgi
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX96591 endoplasmic reticulum
CDY04628 endoplasmic reticulum
CDY50241 endoplasmic reticulum
CDY67972 endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G21460.1 CDX96591 AT1G21460.1 24027245
AT1G21460.1 CDY04628 AT1G21460.1 24027245
AT1G21460.1 CDY50241 AT1G21460.1 24027245
AT1G21460.1 CDY67972 AT1G21460.1 24027245
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50241 Canola extracellular, golgi, plasma membrane 98.37 98.37
CDY67972 Canola golgi, plasma membrane 93.5 91.63
CDX96591 Canola golgi, plasma membrane 93.5 91.63
AT1G21460.1 Thale cress extracellular, golgi, plasma membrane 91.87 91.5
VIT_18s0001g15330.t01 Wine grape golgi, plasma membrane 71.95 71.37
KRH64557 Soybean extracellular, golgi 71.54 71.26
Solyc04g064610.2.1 Tomato plasma membrane 70.33 70.33
PGSC0003DMT400063855 Potato plasma membrane 71.14 69.17
KRH53378 Soybean golgi, plasma membrane 71.95 68.6
Solyc04g064620.2.1 Tomato extracellular, golgi, plasma membrane 68.29 68.57
KRH18105 Soybean plasma membrane 68.7 68.15
KRH15935 Soybean plasma membrane 69.92 67.72
GSMUA_Achr11P... Banana golgi, plasma membrane 63.01 62.25
TraesCS1B01G276000.1 Wheat golgi, plasma membrane, vacuole 65.45 61.69
TraesCS1D01G265400.1 Wheat golgi, plasma membrane, vacuole 65.04 61.3
TraesCS1A01G265200.1 Wheat golgi, plasma membrane, vacuole 64.63 60.69
Os05t0426000-01 Rice plasma membrane 64.23 60.54
Zm00001d038226_P001 Maize golgi, plasma membrane, vacuole 61.38 60.4
EES19554 Sorghum golgi, plasma membrane 62.2 59.77
PGSC0003DMT400063850 Potato plasma membrane 68.29 59.57
PGSC0003DMT400035874 Potato golgi, plasma membrane 47.56 58.79
GSMUA_Achr5P01260_001 Banana golgi, plasma membrane 61.38 58.75
TraesCS3D01G403300.1 Wheat plasma membrane 63.82 58.36
TraesCS3A01G408200.1 Wheat golgi, plasma membrane 64.23 58.3
KXG33819 Sorghum extracellular, golgi 63.01 57.62
TraesCS3B01G441800.1 Wheat golgi, plasma membrane 63.82 57.3
PGSC0003DMT400095936 Potato golgi, plasma membrane 54.06 57.08
Zm00001d000222_P001 Maize plasma membrane 61.79 56.93
Os01t0881300-02 Rice plasma membrane 63.01 56.78
Solyc06g060590.2.1 Tomato plasma membrane 57.32 55.08
Solyc04g064640.2.1 Tomato endoplasmic reticulum, golgi 54.47 54.92
PGSC0003DMT400035873 Potato plasma membrane 56.5 54.3
Solyc06g060580.1.1 Tomato golgi, plasma membrane 54.88 53.78
Solyc04g064630.2.1 Tomato golgi, plasma membrane 51.63 50.8
HORVU3Hr1G091230.10 Barley plasma membrane 56.91 47.95
CDY05123 Canola plasma membrane 41.46 46.79
CDX90787 Canola plasma membrane 41.06 46.33
CDY40867 Canola plasma membrane 43.09 42.57
CDX86834 Canola plasma membrane 43.09 42.57
CDY16757 Canola extracellular, peroxisome, plasma membrane 41.46 42.5
CDY30733 Canola extracellular, golgi, plasma membrane 40.65 41.67
CDY56741 Canola plasma membrane 40.65 41.67
CDY45751 Canola extracellular, golgi, plasma membrane 40.65 41.67
CDY49756 Canola plasma membrane 41.06 41.22
CDY36831 Canola plasma membrane 39.84 41.18
CDY27020 Canola golgi, plasma membrane 43.09 40.93
CDX96199 Canola golgi, plasma membrane 42.68 40.7
CDY69440 Canola plasma membrane 35.37 40.65
CDY61492 Canola golgi, plasma membrane 38.21 40.52
CDY04003 Canola plasma membrane 40.24 40.08
CDY14399 Canola mitochondrion 35.77 39.82
CDY44578 Canola plasma membrane 38.21 39.5
CDY20083 Canola plasma membrane 37.8 39.41
CDY30734 Canola plasma membrane 38.21 39.17
CDX97600 Canola plasma membrane 37.4 38.98
CDX98492 Canola plasma membrane 36.99 38.56
CDY32341 Canola plasma membrane 36.59 38.14
CDY34967 Canola plasma membrane 35.37 37.66
CDY09729 Canola golgi, plasma membrane, vacuole 36.59 37.5
CDX82395 Canola plasma membrane 34.55 36.8
CDX75890 Canola plasma membrane 34.55 36.8
CDX90555 Canola golgi, plasma membrane, vacuole 35.77 36.67
CDX84358 Canola plasma membrane 30.89 36.36
CDY24920 Canola extracellular, golgi, vacuole 22.76 36.13
CDY25828 Canola mitochondrion, plasma membrane 25.61 36.0
CDX86454 Canola plasma membrane, plastid 41.46 34.34
CDY44448 Canola plasma membrane, plastid 41.46 33.77
CDY24854 Canola golgi, plasma membrane 36.59 33.21
CDX77928 Canola plasma membrane 38.21 32.98
CDX83046 Canola plasma membrane 38.21 32.87
CDY34333 Canola golgi, plasma membrane 36.18 32.6
CDY03395 Canola endoplasmic reticulum, golgi, plasma membrane 36.18 32.6
CDY08093 Canola plasma membrane 38.21 32.53
CDY05867 Canola plasma membrane 38.21 32.53
CDX68492 Canola plasma membrane 37.8 32.52
CDX87161 Canola endoplasmic reticulum 36.59 32.49
CDX84877 Canola golgi, plasma membrane 35.77 32.35
CDX92666 Canola golgi, plasma membrane 35.77 32.23
CDY11047 Canola golgi, plasma membrane 35.77 32.23
CDY16863 Canola endoplasmic reticulum, plasma membrane 36.18 32.13
CDY05819 Canola golgi, plasma membrane 38.21 31.97
CDX71659 Canola golgi, plasma membrane 38.21 31.86
CDY53626 Canola plasma membrane 37.4 31.62
CDX88041 Canola plasma membrane 36.99 31.6
CDX80379 Canola plasma membrane 36.99 31.6
CDX78511 Canola plasma membrane 36.99 31.16
CDX91144 Canola plasma membrane 36.99 30.64
CDX85668 Canola endoplasmic reticulum, golgi, plasma membrane 36.99 30.64
CDX97233 Canola golgi, plasma membrane 36.99 30.54
CDX69663 Canola golgi, plasma membrane 36.99 30.54
CDY08964 Canola plastid 34.55 29.51
CDY45750 Canola cytosol, golgi, plasma membrane 33.74 28.72
CDX73521 Canola golgi, mitochondrion, plasma membrane, plastid 30.08 27.92
CDY07676 Canola golgi, plasma membrane 29.67 27.44
Protein Annotations
EnsemblPlants:CDY04628EnsemblPlantsGene:GSBRNA2T00119204001Gene3D:1.20.1280.290GO:A0A078EYD0GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0016020GO:GO:0016021GO:GO:0051119InterPro:SWEET1InterPro:SWEET_sugar_transpr
PANTHER:PTHR10791PANTHER:PTHR10791:SF44PFAM:PF03083ProteinID:CDY04628ProteinID:CDY04628.1SEG:seg
TMHMM:TMhelixunigene:Bna.755UniParc:UPI0004EEDE16MapMan:24.2.6.1::
Description
BnaC05g16660D
Coordinates
chrLK031956:-:474278..475773
Molecular Weight (calculated)
27112.7 Da
IEP (calculated)
9.749
GRAVY (calculated)
0.558
Length
246 amino acids
Sequence
(BLAST)
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKAKIF
101: GVFTAVLAVF ATVALVSLFA LHGNARKLFC GIAATVFSII MYASPLSIMR LVIKTKSVEY MPFFLSLFVF LCGTSWFIYG LIGRDPFVAI PNGFGCALGT
201: LQLILYVIYC GNKGEKSAGK DDKSLEMKVE EKKQNVVNGK QQEQQV
Best Arabidopsis Sequence Match ( AT1G21460.1 )
(BLAST)
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
Arabidopsis Description
SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.