Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0001g15330.t01 | endoplasmic reticulum |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21460.1 | VIT_18s0001g15330.t01 | AT1G21460.1 | 24027245 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64557 | Soybean | extracellular, golgi | 75.81 | 76.11 |
| KRH53378 | Soybean | golgi, plasma membrane | 76.21 | 73.26 |
| Bra017916.1-P | Field mustard | extracellular, golgi | 71.37 | 71.95 |
| CDY04628 | Canola | extracellular, golgi | 71.37 | 71.95 |
| CDY50241 | Canola | extracellular, golgi, plasma membrane | 71.37 | 71.95 |
| AT1G21460.1 | Thale cress | extracellular, golgi, plasma membrane | 70.16 | 70.45 |
| Solyc04g064610.2.1 | Tomato | plasma membrane | 69.76 | 70.33 |
| Bra016421.1-P | Field mustard | golgi, plasma membrane | 70.97 | 70.12 |
| CDX96591 | Canola | golgi, plasma membrane | 70.97 | 70.12 |
| CDY67972 | Canola | golgi, plasma membrane | 70.97 | 70.12 |
| PGSC0003DMT400063855 | Potato | plasma membrane | 70.56 | 69.17 |
| KRH15935 | Soybean | plasma membrane | 70.16 | 68.5 |
| Solyc04g064620.2.1 | Tomato | extracellular, golgi, plasma membrane | 67.34 | 68.16 |
| KRH18105 | Soybean | plasma membrane | 67.34 | 67.34 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane | 64.52 | 64.26 |
| Zm00001d038226_P001 | Maize | golgi, plasma membrane, vacuole | 59.68 | 59.2 |
| GSMUA_Achr5P01260_001 | Banana | golgi, plasma membrane | 61.29 | 59.14 |
| TraesCS1B01G276000.1 | Wheat | golgi, plasma membrane, vacuole | 62.1 | 59.0 |
| EES19554 | Sorghum | golgi, plasma membrane | 60.89 | 58.98 |
| TraesCS1A01G265200.1 | Wheat | golgi, plasma membrane, vacuole | 62.1 | 58.78 |
| TraesCS1D01G265400.1 | Wheat | golgi, plasma membrane, vacuole | 61.69 | 58.62 |
| PGSC0003DMT400063850 | Potato | plasma membrane | 66.53 | 58.51 |
| Os05t0426000-01 | Rice | plasma membrane | 60.89 | 57.85 |
| PGSC0003DMT400035874 | Potato | golgi, plasma membrane | 46.37 | 57.79 |
| Os01t0881300-02 | Rice | plasma membrane | 63.31 | 57.51 |
| Zm00001d000222_P001 | Maize | plasma membrane | 61.69 | 57.3 |
| KXG33819 | Sorghum | extracellular, golgi | 62.1 | 57.25 |
| TraesCS3D01G403300.1 | Wheat | plasma membrane | 61.69 | 56.88 |
| Solyc04g064640.2.1 | Tomato | endoplasmic reticulum, golgi | 55.65 | 56.56 |
| TraesCS3A01G408200.1 | Wheat | golgi, plasma membrane | 61.69 | 56.46 |
| Solyc06g060590.2.1 | Tomato | plasma membrane | 58.06 | 56.25 |
| TraesCS3B01G441800.1 | Wheat | golgi, plasma membrane | 61.29 | 55.47 |
| PGSC0003DMT400035873 | Potato | plasma membrane | 57.26 | 55.47 |
| PGSC0003DMT400095936 | Potato | golgi, plasma membrane | 50.4 | 53.65 |
| Solyc06g060580.1.1 | Tomato | golgi, plasma membrane | 52.42 | 51.79 |
| Solyc04g064630.2.1 | Tomato | golgi, plasma membrane | 51.21 | 50.8 |
| HORVU3Hr1G091230.10 | Barley | plasma membrane | 54.03 | 45.89 |
| VIT_10s0003g02190.t01 | Wine grape | plasma membrane | 39.52 | 42.24 |
| VIT_17s0000g08110.t01 | Wine grape | cytosol, golgi, plasma membrane | 39.11 | 41.45 |
| VIT_16s0050g02540.t01 | Wine grape | plasma membrane | 41.13 | 40.96 |
| VIT_19s0014g00280.t01 | Wine grape | golgi, plasma membrane, plastid | 37.9 | 40.0 |
| VIT_05s0077g02260.t01 | Wine grape | golgi, plasma membrane, vacuole | 37.5 | 39.91 |
| VIT_14s0066g01420.t01 | Wine grape | plasma membrane | 39.52 | 38.58 |
| VIT_02s0025g02080.t01 | Wine grape | plasma membrane | 39.52 | 37.69 |
| VIT_17s0000g08130.t01 | Wine grape | golgi, plasma membrane, vacuole | 22.58 | 36.36 |
| VIT_07s0104g01340.t01 | Wine grape | golgi, plasma membrane | 36.69 | 32.97 |
| VIT_17s0000g00830.t01 | Wine grape | plasma membrane | 35.08 | 32.22 |
| VIT_14s0060g01910.t01 | Wine grape | golgi, plasma membrane | 38.31 | 31.88 |
| VIT_01s0146g00260.t01 | Wine grape | golgi, plasma membrane | 29.44 | 31.06 |
| VIT_04s0043g00980.t01 | Wine grape | golgi, plasma membrane | 20.97 | 29.89 |
| VIT_17s0000g00820.t01 | Wine grape | plasma membrane | 30.24 | 28.2 |
| VIT_14s0060g01890.t01 | Wine grape | plasma membrane | 36.69 | 17.91 |
Protein Annotations
| Gene3D:1.20.1280.290 | EntrezGene:100247121 | wikigene:100247121 | MapMan:24.2.6.1 | EMBL:AM473914 | ProteinID:CAN59909 |
| ProteinID:CAN59909.1 | ProteinID:CBI19954 | ProteinID:CBI19954.3 | UniProt:E0CQM5 | EMBL:FN595227 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008643 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0034219 | GO:GO:0051119 |
| GO:GO:0051260 | EntrezGene:LOC100247121 | wikigene:LOC100247121 | PFAM:PF03083 | PANTHER:PTHR10791 | PANTHER:PTHR10791:SF44 |
| InterPro:SWEET1 | InterPro:SWEET_sugar_transpr | TIGR:TC57535 | TMHMM:TMhelix | UniParc:UPI0001985273 | ArrayExpress:VIT_18s0001g15330 |
| EnsemblPlantsGene:VIT_18s0001g15330 | EnsemblPlants:VIT_18s0001g15330.t01 | unigene:Vvi.10395 | RefSeq:XP_002265836 | RefSeq:XP_002265836.1 | SEG:seg |
Description
Bidirectional sugar transporter SWEET [Source:UniProtKB/TrEMBL;Acc:E0CQM5]
Coordinates
chr18:-:13476403..13478586
Molecular Weight (calculated)
27354.3 Da
IEP (calculated)
10.113
GRAVY (calculated)
0.682
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAHHALHFT FGIFGNATAL FLFLAPLITF KRIIKSKSTE QFSGIPYVMT LLNCLLSAWY GLPFVSKNNI LVSTINGTGA AIEIIYVLIF IAYSIKKERA
101: KILGLFIFVL SVFGVVVFVS LFALHGHSRK LFCGLAATIF SIIMYASPLS IMRMVIKTKS VEYMPFFLSL FVFLCGTSWF VFGLLGKDPF VAVPNGFGCG
201: LGAMQLILYA IYCKKGKSKN LAAADKPVDM ELGKPQQEKQ SRAQNGNV
101: KILGLFIFVL SVFGVVVFVS LFALHGHSRK LFCGLAATIF SIIMYASPLS IMRMVIKTKS VEYMPFFLSL FVFLCGTSWF VFGLLGKDPF VAVPNGFGCG
201: LGAMQLILYA IYCKKGKSKN LAAADKPVDM ELGKPQQEKQ SRAQNGNV
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
Arabidopsis Description
SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [plasma membrane,golgi,extracellular]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.