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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:
  • plastid 2
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 3
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g064610.2.1 endoplasmic reticulum
Solyc04g064620.2.1 endoplasmic reticulum
Solyc04g064630.2.1 endoplasmic reticulum
Solyc04g064640.2.1 endoplasmic reticulum
Solyc06g060580.1.1 endoplasmic reticulum
Solyc06g060590.2.1 endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G21460.1 Solyc04g064610.2.1 AT1G21460.1 24027245
AT1G21460.1 Solyc04g064620.2.1 AT1G21460.1 24027245
AT1G21460.1 Solyc04g064630.2.1 AT1G21460.1 24027245
AT1G21460.1 Solyc04g064640.2.1 AT1G21460.1 24027245
AT1G21460.1 Solyc06g060580.1.1 AT1G21460.1 24027245
AT1G21460.1 Solyc06g060590.2.1 AT1G21460.1 24027245
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g064620.2.1 Tomato extracellular, golgi, plasma membrane 63.52 63.27
Solyc04g064630.2.1 Tomato golgi, plasma membrane 64.75 63.2
KRH64557 Soybean extracellular, golgi 56.56 55.87
VIT_18s0001g15330.t01 Wine grape golgi, plasma membrane 56.56 55.65
CDY50241 Canola extracellular, golgi, plasma membrane 55.33 54.88
Bra017916.1-P Field mustard extracellular, golgi 54.92 54.47
CDY04628 Canola extracellular, golgi 54.92 54.47
KRH18105 Soybean plasma membrane 54.92 54.03
KRH53378 Soybean golgi, plasma membrane 56.97 53.88
Solyc04g064610.2.1 Tomato plasma membrane 54.1 53.66
KRH15935 Soybean plasma membrane 55.74 53.54
AT1G21460.1 Thale cress extracellular, golgi, plasma membrane 53.69 53.04
CDY67972 Canola golgi, plasma membrane 54.51 52.99
CDX96591 Canola golgi, plasma membrane 54.51 52.99
Bra016421.1-P Field mustard golgi, plasma membrane 54.51 52.99
GSMUA_Achr11P... Banana golgi, plasma membrane 52.46 51.41
EES19554 Sorghum golgi, plasma membrane 51.64 49.22
Zm00001d038226_P001 Maize golgi, plasma membrane, vacuole 50.41 49.2
TraesCS1B01G276000.1 Wheat golgi, plasma membrane, vacuole 51.64 48.28
TraesCS1A01G265200.1 Wheat golgi, plasma membrane, vacuole 51.64 48.09
Os01t0881300-02 Rice plasma membrane 53.69 47.99
TraesCS1D01G265400.1 Wheat golgi, plasma membrane, vacuole 51.23 47.89
GSMUA_Achr5P01260_001 Banana golgi, plasma membrane 50.41 47.86
TraesCS3D01G403300.1 Wheat plasma membrane 52.46 47.58
Zm00001d000222_P001 Maize plasma membrane 52.05 47.57
TraesCS3A01G408200.1 Wheat golgi, plasma membrane 52.46 47.23
KXG33819 Sorghum extracellular, golgi 52.05 47.21
Os05t0426000-01 Rice plasma membrane 50.41 47.13
TraesCS3B01G441800.1 Wheat golgi, plasma membrane 52.46 46.72
Solyc06g060590.2.1 Tomato plasma membrane 46.31 44.14
Solyc06g060580.1.1 Tomato golgi, plasma membrane 44.26 43.03
Solyc02g071520.2.1 Tomato plasma membrane 41.39 42.98
Solyc03g005880.2.1 Tomato plasma membrane 40.16 41.35
Solyc03g114200.2.1 Tomato golgi, plasma membrane, plastid 39.34 40.68
Solyc07g062120.2.1 Tomato plasma membrane, plastid 38.93 40.43
Solyc06g071400.2.1 Tomato cytosol, golgi, plasma membrane 38.52 39.5
HORVU3Hr1G091230.10 Barley plasma membrane 47.13 39.38
Solyc01g099870.1.1 Tomato plasma membrane, vacuole 29.1 38.17
Solyc03g007360.2.1 Tomato golgi, plasma membrane 39.75 37.74
Solyc12g055870.1.1 Tomato golgi, plasma membrane 36.07 36.67
Solyc08g082770.2.1 Tomato golgi, plasma membrane 36.89 35.86
Solyc02g086920.1.1 Tomato golgi, plasma membrane 34.02 35.62
Solyc01g099880.2.1 Tomato endoplasmic reticulum, golgi, plasma membrane 40.57 33.79
Solyc03g097610.2.1 Tomato golgi, plasma membrane 35.66 30.85
Solyc11g028270.1.1 Tomato extracellular 22.13 30.17
Solyc03g097620.1.1 Tomato plasma membrane 34.02 30.07
Solyc06g072620.2.1 Tomato golgi, plasma membrane 33.2 28.22
Solyc09g074530.2.1 Tomato golgi, plasma membrane 32.79 27.97
Solyc03g097870.2.1 Tomato golgi, plasma membrane 33.2 27.0
Solyc03g097580.2.1 Tomato golgi, plasma membrane 33.2 26.82
Solyc03g097600.2.1 Tomato golgi, plasma membrane 31.97 26.35
Solyc06g072640.1.1 Tomato plasma membrane 30.33 26.24
Solyc03g097590.2.1 Tomato golgi, plasma membrane 31.97 26.17
Solyc06g072630.2.1 Tomato plasma membrane 30.33 25.61
Solyc03g097560.2.1 Tomato golgi, plasma membrane 30.33 25.08
Solyc03g097570.2.1 Tomato cytosol, golgi, plasma membrane 31.15 25.0
Solyc05g024260.2.1 Tomato plasma membrane 28.69 23.73
Protein Annotations
Gene3D:1.20.1280.290MapMan:24.2.6.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0006810GO:GO:0008150GO:GO:0008643GO:GO:0016020GO:GO:0016021
GO:GO:0034219GO:GO:0051119UniProt:K4BT55PFAM:PF03083PANTHER:PTHR10791PANTHER:PTHR10791:SF44
InterPro:SWEET1InterPro:SWEET_sugar_transprEnsemblPlantsGene:Solyc04g064640.2EnsemblPlants:Solyc04g064640.2.1TMHMM:TMhelixUniParc:UPI0002766458
Description
Bidirectional sugar transporter SWEET [Source:UniProtKB/TrEMBL;Acc:K4BT55]
Coordinates
chr4:-:55809809..55812814
Molecular Weight (calculated)
27248.3 Da
IEP (calculated)
9.347
GRAVY (calculated)
0.703
Length
244 amino acids
Sequence
(BLAST)
001: MRDIKVLHTA FGILGNVFGV LLFMAPMITF KRIISKRSTE QFSNIPYVIA LLNCLLSVWY SLPFVSPDNL LVTIVNSIGA GLEATYVLIF LIFAPKKEKA
101: KICGYLVVVF SIVSCVALVS LLAFHGNKRK LLCGFAFTVS CIMMYGSPLS VMRRVIKSKS VEYMPFFLSL AVFICSLSWF FFALLGKDPF ILVPNAIGTL
201: LGAMQLILYA IYRASEVKKD EMNESVETRT GELQDKKLAY NEDA
Best Arabidopsis Sequence Match ( AT1G21460.1 )
(BLAST)
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
Arabidopsis Description
SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [plasma membrane,golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.