Factsheet for Solyc04g064610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g064610.2.1	endoplasmic reticulum
Solyc04g064620.2.1	endoplasmic reticulum
Solyc04g064630.2.1	endoplasmic reticulum
Solyc04g064640.2.1	endoplasmic reticulum
Solyc06g060580.1.1	endoplasmic reticulum
Solyc06g060590.2.1	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21460.1	Solyc04g064610.2.1	AT1G21460.1	24027245
AT1G21460.1	Solyc04g064620.2.1	AT1G21460.1	24027245
AT1G21460.1	Solyc04g064630.2.1	AT1G21460.1	24027245
AT1G21460.1	Solyc04g064640.2.1	AT1G21460.1	24027245
AT1G21460.1	Solyc06g060580.1.1	AT1G21460.1	24027245
AT1G21460.1	Solyc06g060590.2.1	AT1G21460.1	24027245

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063855	Potato	plasma membrane	96.75	94.07
Bra017916.1-P	Field mustard	extracellular, golgi	70.33	70.33
CDY04628	Canola	extracellular, golgi	70.33	70.33
CDY50241	Canola	extracellular, golgi, plasma membrane	69.92	69.92
VIT_18s0001g15330.t01	Wine grape	golgi, plasma membrane	70.33	69.76
Bra016421.1-P	Field mustard	golgi, plasma membrane	70.33	68.92
CDY67972	Canola	golgi, plasma membrane	70.33	68.92
CDX96591	Canola	golgi, plasma membrane	70.33	68.92
AT1G21460.1	Thale cress	extracellular, golgi, plasma membrane	69.11	68.83
KRH64557	Soybean	extracellular, golgi	69.11	68.83
Solyc04g064620.2.1	Tomato	extracellular, golgi, plasma membrane	66.26	66.53
KRH53378	Soybean	golgi, plasma membrane	69.11	65.89
KRH15935	Soybean	plasma membrane	66.26	64.17
KRH18105	Soybean	plasma membrane	64.63	64.11
GSMUA_Achr11P...	Banana	golgi, plasma membrane	63.01	62.25
Solyc06g060590.2.1	Tomato	plasma membrane	60.57	58.2
Zm00001d038226_P001	Maize	golgi, plasma membrane, vacuole	58.54	57.6
EES19554	Sorghum	golgi, plasma membrane	59.76	57.42
TraesCS1A01G265200.1	Wheat	golgi, plasma membrane, vacuole	59.76	56.11
GSMUA_Achr5P01260_001	Banana	golgi, plasma membrane	58.54	56.03
TraesCS1D01G265400.1	Wheat	golgi, plasma membrane, vacuole	59.35	55.94
TraesCS1B01G276000.1	Wheat	golgi, plasma membrane, vacuole	59.35	55.94
Os05t0426000-01	Rice	plasma membrane	58.94	55.56
Zm00001d000222_P001	Maize	plasma membrane	59.76	55.06
Solyc06g060580.1.1	Tomato	golgi, plasma membrane	56.1	54.98
Os01t0881300-02	Rice	plasma membrane	60.98	54.95
KXG33819	Sorghum	extracellular, golgi	59.35	54.28
Solyc04g064640.2.1	Tomato	endoplasmic reticulum, golgi	53.66	54.1
TraesCS3D01G403300.1	Wheat	plasma membrane	58.54	53.53
TraesCS3A01G408200.1	Wheat	golgi, plasma membrane	58.54	53.14
TraesCS3B01G441800.1	Wheat	golgi, plasma membrane	58.94	52.92
Solyc04g064630.2.1	Tomato	golgi, plasma membrane	52.85	52.0
Solyc02g071520.2.1	Tomato	plasma membrane	43.9	45.96
Solyc03g005880.2.1	Tomato	plasma membrane	43.5	45.15
HORVU3Hr1G091230.10	Barley	plasma membrane	53.25	44.86
Solyc01g099870.1.1	Tomato	plasma membrane, vacuole	31.71	41.94
Solyc07g062120.2.1	Tomato	plasma membrane, plastid	39.43	41.28
Solyc03g114200.2.1	Tomato	golgi, plasma membrane, plastid	39.43	41.1
Solyc06g071400.2.1	Tomato	cytosol, golgi, plasma membrane	39.02	40.34
Solyc02g086920.1.1	Tomato	golgi, plasma membrane	36.18	38.2
Solyc12g055870.1.1	Tomato	golgi, plasma membrane	36.99	37.92
Solyc03g007360.2.1	Tomato	golgi, plasma membrane	38.62	36.97
Solyc08g082770.2.1	Tomato	golgi, plasma membrane	36.99	36.26
Solyc03g097610.2.1	Tomato	golgi, plasma membrane	37.4	32.62
Solyc03g097620.1.1	Tomato	plasma membrane	36.18	32.25
Solyc01g099880.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	37.4	31.4
Solyc06g072620.2.1	Tomato	golgi, plasma membrane	36.18	31.01
Solyc03g097590.2.1	Tomato	golgi, plasma membrane	36.59	30.2
Solyc03g097580.2.1	Tomato	golgi, plasma membrane	36.99	30.13
Solyc03g097870.2.1	Tomato	golgi, plasma membrane	36.59	30.0
Solyc09g074530.2.1	Tomato	golgi, plasma membrane	34.55	29.72
Solyc11g028270.1.1	Tomato	extracellular	21.54	29.61
Solyc03g097600.2.1	Tomato	golgi, plasma membrane	35.37	29.39
Solyc03g097560.2.1	Tomato	golgi, plasma membrane	34.15	28.47
Solyc06g072630.2.1	Tomato	plasma membrane	32.93	28.03
Solyc06g072640.1.1	Tomato	plasma membrane	31.71	27.66
Solyc03g097570.2.1	Tomato	cytosol, golgi, plasma membrane	34.15	27.63
Solyc05g024260.2.1	Tomato	plasma membrane	32.52	27.12

Protein Annotations

Gene3D:1.20.1280.290	MapMan:24.2.6.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0008643	GO:GO:0016020	GO:GO:0016021
GO:GO:0034219	GO:GO:0051119	UniProt:K4BT52	PFAM:PF03083	PANTHER:PTHR10791	PANTHER:PTHR10791:SF44
InterPro:SWEET1	InterPro:SWEET_sugar_transpr	EnsemblPlantsGene:Solyc04g064610.2	EnsemblPlants:Solyc04g064610.2.1	TMHMM:TMhelix	UniParc:UPI0002766455
SEG:seg	:	:	:	:	:

Description

Bidirectional sugar transporter SWEET [Source:UniProtKB/TrEMBL;Acc:K4BT52]

Coordinates

chr4:-:55774260..55776094

Molecular Weight (calculated)

27104.8 Da

IEP (calculated)

10.149

GRAVY (calculated)

0.668

Length

246 amino acids

Sequence
(BLAST)

001: MGVVHTLHFV FGIFGNATAL FLFLAPIITF KRVIQNRSTE QFSGLPYVMT LLNCLLSAWY GLPFVSPNNL LVSTINGTGA VIETIYVLIF IAFAPTKEKK
101: KISALFLLVL TVFAAVALVS MLGLHGSKRK LFCGIAATIF SIIMYGSPLS IIRLVIKTKS VEFMPFFLSL FVFLCGASWF AFGLLGKDPF VAIPNGFGFG
201: LGTVQLILYA IYCEKKGFTR KSNLDESNGK SHQEEKQSSK SRLEQV

Best Arabidopsis Sequence Match ( AT1G21460.1 )
(BLAST)

001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV

Arabidopsis Description

SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [plasma membrane,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.