Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- golgi 6
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
18557835
plasma membrane: 27800704 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0881300-02 | endoplasmic reticulum |
| Os05t0426000-01 | endoplasmic reticulum |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G21460.1 | Os01t0881300-02 | AT1G21460.1 | 24027245 |
| AT1G21460.1 | Os05t0426000-01 | AT1G21460.1 | 24027245 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000222_P001 | Maize | plasma membrane | 85.71 | 87.64 |
| KXG33819 | Sorghum | extracellular, golgi | 83.88 | 85.13 |
| TraesCS3D01G403300.1 | Wheat | plasma membrane | 83.52 | 84.76 |
| TraesCS3A01G408200.1 | Wheat | golgi, plasma membrane | 83.52 | 84.13 |
| TraesCS3B01G441800.1 | Wheat | golgi, plasma membrane | 83.52 | 83.21 |
| Os05t0426000-01 | Rice | plasma membrane | 66.67 | 69.73 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane | 61.9 | 67.87 |
| KRH64557 | Soybean | extracellular, golgi | 59.34 | 65.59 |
| KRH15935 | Soybean | plasma membrane | 60.44 | 64.96 |
| AT1G21460.1 | Thale cress | extracellular, golgi, plasma membrane | 57.88 | 63.97 |
| GSMUA_Achr5P01260_001 | Banana | golgi, plasma membrane | 60.07 | 63.81 |
| KRH18105 | Soybean | plasma membrane | 57.88 | 63.71 |
| VIT_18s0001g15330.t01 | Wine grape | golgi, plasma membrane | 57.51 | 63.31 |
| CDY04628 | Canola | extracellular, golgi | 56.78 | 63.01 |
| KRH53378 | Soybean | golgi, plasma membrane | 59.34 | 62.79 |
| CDY50241 | Canola | extracellular, golgi, plasma membrane | 56.41 | 62.6 |
| Bra017916.1-P | Field mustard | extracellular, golgi | 56.41 | 62.6 |
| Bra016421.1-P | Field mustard | golgi, plasma membrane | 57.14 | 62.15 |
| CDX96591 | Canola | golgi, plasma membrane | 57.14 | 62.15 |
| CDY67972 | Canola | golgi, plasma membrane | 57.14 | 62.15 |
| HORVU3Hr1G091230.10 | Barley | plasma membrane | 65.93 | 61.64 |
| Solyc04g064620.2.1 | Tomato | extracellular, golgi, plasma membrane | 55.31 | 61.63 |
| Solyc04g064610.2.1 | Tomato | plasma membrane | 54.95 | 60.98 |
| PGSC0003DMT400063855 | Potato | plasma membrane | 56.04 | 60.47 |
| Solyc04g064630.2.1 | Tomato | golgi, plasma membrane | 49.82 | 54.4 |
| PGSC0003DMT400035874 | Potato | golgi, plasma membrane | 39.56 | 54.27 |
| PGSC0003DMT400063850 | Potato | plasma membrane | 56.04 | 54.26 |
| Solyc04g064640.2.1 | Tomato | endoplasmic reticulum, golgi | 47.99 | 53.69 |
| Os09t0256650-00 | Rice | extracellular | 19.05 | 53.06 |
| PGSC0003DMT400095936 | Potato | golgi, plasma membrane | 44.32 | 51.93 |
| Solyc06g060590.2.1 | Tomato | plasma membrane | 47.62 | 50.78 |
| Solyc06g060580.1.1 | Tomato | golgi, plasma membrane | 45.42 | 49.4 |
| PGSC0003DMT400035873 | Potato | plasma membrane | 45.79 | 48.83 |
| Os01t0700100-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 39.19 | 46.52 |
| Os05t0588500-01 | Rice | golgi, plasma membrane, vacuole | 38.1 | 43.88 |
| Os01t0605700-01 | Rice | golgi, plasma membrane, plastid | 40.29 | 43.31 |
| Os01t0606000-00 | Rice | plasma membrane | 39.93 | 42.08 |
| Os01t0541800-01 | Rice | plasma membrane | 37.36 | 41.98 |
| Os09t0258700-00 | Rice | plasma membrane | 33.33 | 40.99 |
| Os12t0178500-00 | Rice | plasma membrane | 30.77 | 40.19 |
| Os02t0301100-01 | Rice | plasma membrane | 37.73 | 39.77 |
| Os05t0214300-00 | Rice | golgi, plasma membrane | 31.5 | 33.08 |
| Os02t0513100-01 | Rice | golgi, plasma membrane, plastid | 37.36 | 31.97 |
| Os12t0476200-01 | Rice | extracellular, golgi | 33.7 | 31.08 |
| Os11t0508600-01 | Rice | golgi, plasma membrane | 34.43 | 31.02 |
| Os09t0508250-00 | Rice | extracellular, golgi | 18.68 | 29.14 |
| Os08t0535200-01 | Rice | golgi, plasma membrane, plastid | 31.87 | 28.34 |
| Os09t0254600-00 | Rice | plastid | 26.37 | 27.91 |
| Os03t0347500-01 | Rice | golgi, plasma membrane | 30.4 | 27.67 |
| Os03t0341300-01 | Rice | plasma membrane | 21.25 | 22.83 |
Protein Annotations
| Gene3D:1.20.1280.290 | MapMan:24.2.6.1 | EntrezGene:4324848 | EMBL:AK067960 | ProteinID:BAB90353.1 | ProteinID:BAC06235.1 |
| ProteinID:BAF06912.1 | ProteinID:BAS75562.1 | ProteinID:EAZ14380.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008643 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034219 | GO:GO:0051119 | EnsemblPlantsGene:Os01g0881300 | EnsemblPlants:Os01t0881300-02 |
| PFAM:PF03083 | PANTHER:PTHR10791 | PANTHER:PTHR10791:SF44 | UniProt:Q8RZQ8 | InterPro:SWEET1 | InterPro:SWEET_sugar_transpr |
| TMHMM:TMhelix | UniParc:UPI000009F7EB | RefSeq:XP_015610839.1 | SEG:seg | : | : |
Description
SWEET1ANon-protein coding transcript. (Os01t0881300-01);MtN3 and saliva related transmembrane protein family protein. (Os01t0881300-02)
Coordinates
chr1:+:38254055..38257595
Molecular Weight (calculated)
29504.5 Da
IEP (calculated)
8.461
GRAVY (calculated)
0.614
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHIARFFFG VSGNVIALFL FLSPVVTFWR IIKKRSTEDF SGVPYNMTLL NCLLSAWYGL PFVSPNNILV TTINGTGSVI EAIYVVIFLI FAERKARLKM
101: MGLLGLVTSI FTMVVLVSLL ALHGQGRKLF CGLAATIFSI CMYASPLSIM RLVIKTKSVE FMPFLLSLSV FLCGTSWFIY GLLGRDPFIA IPNGCGSFLG
201: LMQLILYAIY RNHKGATPAA AAGKGDAADE VEDAKKAAAA VEMADAKTNK VVADDADADA DGKSADDKVA SQV
101: MGLLGLVTSI FTMVVLVSLL ALHGQGRKLF CGLAATIFSI CMYASPLSIM RLVIKTKSVE FMPFLLSLSV FLCGTSWFIY GLLGRDPFIA IPNGCGSFLG
201: LMQLILYAIY RNHKGATPAA AAGKGDAADE VEDAKKAAAA VEMADAKTNK VVADDADADA DGKSADDKVA SQV
001: MNIAHTIFGV FGNATALFLF LAPSITFKRI IKNKSTEQFS GIPYPMTLLN CLLSAWYGLP FVSKDNTLVS TINGTGAVIE TVYVLIFLFY APKKEKIKIF
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
101: GIFSCVLAVF ATVALVSLFA LQGNGRKLFC GLAATVFSII MYASPLSIMR LVVKTKSVEF MPFFLSLFVF LCGTSWFVYG LIGRDPFVAI PNGFGCALGT
201: LQLILYFIYC GNKGEKSADA QKDEKSVEMK DDEKKQNVVN GKQDLQV
Arabidopsis Description
SWEET1Bidirectional sugar transporter SWEET1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9J7]
SUBAcon: [extracellular,golgi,plasma membrane]
SUBAcon: [extracellular,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.