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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • plastid 5
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX86454 plasma membrane
CDY04003 plasma membrane
CDY44448 plasma membrane
CDY49756 plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28007.1 CDX86454 AT3G28007.1 24027245
AT3G28007.1 CDY04003 AT3G28007.1 24027245
AT3G28007.1 CDY44448 AT3G28007.1 24027245
AT3G28007.1 CDY49756 AT3G28007.1 24027245
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025317.1-P Field mustard plasma membrane 83.5 100.0
CDY44448 Canola plasma membrane, plastid 96.63 95.03
CDY49756 Canola plasma membrane 76.43 92.65
AT3G28007.1 Thale cress plasma membrane 76.09 90.04
CDY04003 Canola plasma membrane 74.75 89.88
Os09t0256650-00 Rice extracellular 20.54 62.24
TraesCS7B01G410700.1 Wheat plasma membrane 48.82 58.94
TraesCS7B01G410800.1 Wheat golgi, plasma membrane, vacuole 35.35 58.66
TraesCS7A01G533900.1 Wheat plasma membrane 47.81 58.44
TraesCS7D01G521400.1 Wheat plasma membrane 47.81 58.44
TraesCS7A01G503100.1 Wheat plasma membrane 48.48 58.3
TraesCS7B01G451200.1 Wheat plasma membrane 47.47 58.02
HORVU2Hr1G006520.1 Barley peroxisome, plasma membrane, vacuole 45.45 57.94
TraesCS1A01G360900.1 Wheat plasma membrane 48.15 57.89
TraesCS1D01G365200.1 Wheat plasma membrane 48.15 57.89
HORVU2Hr1G006510.1 Barley plasma membrane 47.81 57.72
TraesCS1B01G377200.1 Wheat plasma membrane 47.47 57.09
CDY16757 Canola extracellular, peroxisome, plasma membrane 46.13 57.08
CDY56741 Canola plasma membrane 45.79 56.67
Os05t0588500-01 Rice golgi, plasma membrane, vacuole 45.12 56.54
TraesCSU01G013400.1 Wheat plasma membrane 46.8 56.5
TraesCSU01G181700.1 Wheat plasma membrane 46.8 56.5
TraesCSU01G191700.1 Wheat plasma membrane 46.8 56.5
EES20039 Sorghum golgi, plasma membrane, vacuole 45.45 56.49
TraesCS2A01G043400.1 Wheat plasma membrane 46.46 56.1
TraesCS2A01G051800.1 Wheat plasma membrane 46.46 56.1
TraesCS2D01G042500.1 Wheat plasma membrane 46.46 56.1
TraesCS2D01G042600.1 Wheat plasma membrane 46.46 56.1
TraesCSU01G013200.1 Wheat plasma membrane 46.46 56.1
TraesCSU01G162000.1 Wheat plasma membrane 46.46 56.1
TraesCS7B01G064800.1 Wheat plasma membrane 38.72 55.83
Zm00001d044421_P001 Maize plasma membrane 45.79 55.74
VIT_14s0066g01420.t01 Wine grape plasma membrane 47.47 55.51
EES01039 Sorghum plasma membrane 45.45 55.33
TraesCS2B01G055900.1 Wheat plasma membrane 45.79 55.28
TraesCS2B01G056100.1 Wheat plasma membrane 45.79 55.28
TraesCS7A01G159800.1 Wheat plasma membrane 45.79 55.28
TraesCS7D01G160600.1 Wheat plasma membrane 45.79 55.28
TraesCS2A01G043200.1 Wheat plasma membrane 43.1 54.94
TraesCS2B01G055700.1 Wheat plasma membrane 43.1 54.94
TraesCS7B01G064400.1 Wheat plasma membrane 45.45 54.88
TraesCS7B01G064600.1 Wheat plasma membrane 45.45 54.88
Zm00001d011299_P001 Maize plasma membrane 44.78 54.73
CDY30733 Canola extracellular, golgi, plasma membrane 44.11 54.58
CDY45751 Canola extracellular, golgi, plasma membrane 44.11 54.58
TraesCS2D01G042400.1 Wheat plasma membrane 42.76 54.51
TraesCS7B01G064300.1 Wheat plasma membrane 45.12 54.47
HORVU7Hr1G117490.1 Barley plasma membrane 47.47 54.23
TraesCS7B01G064700.1 Wheat plasma membrane 44.78 54.06
Os01t0605700-01 Rice golgi, plasma membrane, plastid 46.13 53.94
CDY05123 Canola plasma membrane 39.06 53.21
TraesCS7D01G490600.1 Wheat plasma membrane 28.96 53.09
CDY30734 Canola plasma membrane 42.76 52.92
GSMUA_Achr6P09180_001 Banana plasma membrane 41.41 52.34
CDX90787 Canola plasma membrane 38.38 52.29
GSMUA_Achr10P... Banana extracellular, golgi, plasma membrane 41.08 52.14
Os01t0606000-00 Rice plasma membrane 45.45 52.12
TraesCS2D01G052100.1 Wheat plasma membrane 33.67 51.28
TraesCSU01G232400.1 Wheat plasma membrane 33.67 51.28
HORVU1Hr1G079940.2 Barley peroxisome, plasma membrane, plastid 49.49 51.22
TraesCSU01G249000.1 Wheat golgi, plasma membrane, vacuole 24.58 50.34
TraesCSU01G249100.1 Wheat golgi, plasma membrane, vacuole 24.58 50.34
Os09t0258700-00 Rice plasma membrane 37.37 50.0
TraesCS7B01G064500.1 Wheat plasma membrane 32.32 49.23
Os12t0178500-00 Rice plasma membrane 34.01 48.33
CDY40867 Canola plasma membrane 40.4 48.19
CDX86834 Canola plasma membrane 40.07 47.79
CDY44578 Canola plasma membrane 38.05 47.48
CDX84358 Canola plasma membrane 33.33 47.37
CDY36831 Canola plasma membrane 37.71 47.06
TraesCS2B01G055800.1 Wheat plasma membrane 45.45 46.88
TraesCS3D01G227000.1 Wheat plasma membrane 31.99 46.8
TraesCS7A01G503300.1 Wheat plasma membrane 39.73 46.64
TraesCS7A01G503200.1 Wheat plasma membrane 41.41 46.59
TraesCS2B01G056000.2 Wheat plasma membrane 39.39 42.7
CDY04628 Canola extracellular, golgi 34.34 41.46
CDY50241 Canola extracellular, golgi, plasma membrane 34.34 41.46
CDX96591 Canola golgi, plasma membrane 34.34 40.64
CDY67972 Canola golgi, plasma membrane 33.67 39.84
CDX75890 Canola plasma membrane 30.64 39.39
CDX82395 Canola plasma membrane 30.64 39.39
CDY34967 Canola plasma membrane 30.3 38.96
CDY09729 Canola golgi, plasma membrane, vacuole 30.98 38.33
CDX90555 Canola golgi, plasma membrane, vacuole 30.64 37.92
CDY69440 Canola plasma membrane 26.94 37.38
CDY27020 Canola golgi, plasma membrane 32.32 37.07
CDX96199 Canola golgi, plasma membrane 31.99 36.82
CDY45750 Canola cytosol, golgi, plasma membrane 35.69 36.68
Os09t0254600-00 Rice plastid 31.31 36.05
CDY24920 Canola extracellular, golgi, vacuole 18.18 34.84
CDY14399 Canola mitochondrion 25.59 34.39
CDY61492 Canola golgi, plasma membrane 26.26 33.62
CDX98492 Canola plasma membrane 25.93 32.63
CDX97600 Canola plasma membrane 25.59 32.2
CDY20083 Canola plasma membrane 25.25 31.78
CDY25828 Canola mitochondrion, plasma membrane 18.18 30.86
CDY32341 Canola plasma membrane 24.24 30.51
CDX84877 Canola golgi, plasma membrane 27.61 30.15
CDX87161 Canola endoplasmic reticulum 27.95 29.96
CDY16863 Canola endoplasmic reticulum, plasma membrane 27.95 29.96
CDY34333 Canola golgi, plasma membrane 27.27 29.67
CDX77928 Canola plasma membrane 28.28 29.47
CDY03395 Canola endoplasmic reticulum, golgi, plasma membrane 26.94 29.3
CDX68492 Canola plasma membrane 27.95 29.02
CDX83046 Canola plasma membrane 27.95 29.02
CDX92666 Canola golgi, plasma membrane 26.6 28.94
CDY11047 Canola golgi, plasma membrane 26.6 28.94
CDY24854 Canola golgi, plasma membrane 26.26 28.78
CDX73521 Canola golgi, mitochondrion, plasma membrane, plastid 25.59 28.68
CDX80379 Canola plasma membrane 27.61 28.47
CDX88041 Canola plasma membrane 27.61 28.47
CDY05867 Canola plasma membrane 27.61 28.37
CDY08093 Canola plasma membrane 27.61 28.37
CDX85668 Canola endoplasmic reticulum, golgi, plasma membrane 27.95 27.95
CDX91144 Canola plasma membrane 27.95 27.95
CDY07676 Canola golgi, plasma membrane 24.92 27.82
CDX69663 Canola golgi, plasma membrane 27.61 27.52
CDY53626 Canola plasma membrane 26.94 27.49
CDX78511 Canola plasma membrane 26.6 27.05
CDY05819 Canola golgi, plasma membrane 26.6 26.87
CDX97233 Canola golgi, plasma membrane 26.94 26.85
CDX71659 Canola golgi, plasma membrane 26.6 26.78
CDY08964 Canola plastid 24.92 25.69
Protein Annotations
EnsemblPlants:CDX86454EnsemblPlantsGene:GSBRNA2T00144602001Gene3D:1.20.1280.290GO:A0A078DDP6GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:SWEET_sugar_transprPANTHER:PTHR10791PANTHER:PTHR10791:SF42PFAM:PF03083ProteinID:CDX86454
ProteinID:CDX86454.1SEG:segTMHMM:TMhelixUniParc:UPI0004EF4701MapMan:24.2.6.1:
Description
BnaA06g31710D
Coordinates
chrLK031845:+:1649683..1651639
Molecular Weight (calculated)
32985.2 Da
IEP (calculated)
9.399
GRAVY (calculated)
0.760
Length
297 amino acids
Sequence
(BLAST)
001: MSTYISIPTS LRVSINISKT HIFNISNCIS LSLSLVFFVS CFLFLLVNKM VSATVARNIA GIFGNVISLF LFLSPIPTFI TIYKMKKVEE YKADPYLATV
101: LNCALWVFYG LPIVHPDSLL VITINATGLA IELFYLSIFF YFSPTPRKVK VGLWLVGEMV FVGIVATCTL LLFHTHNKRS SFVGIICVIF VSLMYIAPLT
201: IMSKVIKTKS VRYMPFSLSL ANFLNGIIWV IYALIKFDLF ILIGNGLGTV SGAVQLILYA CYYKTTPKDD EEEDNLSKAN SQLQLSGNQG QAKGVPA
Best Arabidopsis Sequence Match ( AT3G28007.1 )
(BLAST)
001: MVNATVARNI AGICGNVISL FLFLSPIPTF ITIYKKKKVE EYKADPYLAT VLNCALWVFY GLPMVQPDSL LVITINGTGL AIELVYLAIF FFFSPTSRKV
101: KVGLWLIGEM VFVGIVATCT LLLFHTHNQR SSFVGIFCVI FVSLMYIAPL TIMSKVIKTK SVKYMPFSLS LANFLNGVVW VIYALIKFDL FILIGNGLGT
201: VSGAVQLILY ACYYKTTPKD DEDEEDEENL SKVNSQLQLS GNSGQAKRVS A
Arabidopsis Description
SWEET4Bidirectional sugar transporter SWEET4 [Source:UniProtKB/Swiss-Prot;Acc:Q944M5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.