Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 5
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:golgi
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX86454 plasma membrane
CDY04003 plasma membrane
CDY44448 plasma membrane
CDY49756 plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28007.1 CDX86454 AT3G28007.1 24027245
AT3G28007.1 CDY04003 AT3G28007.1 24027245
AT3G28007.1 CDY44448 AT3G28007.1 24027245
AT3G28007.1 CDY49756 AT3G28007.1 24027245
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49756 Canola plasma membrane 95.95 96.73
AT3G28007.1 Thale cress plasma membrane 87.45 86.06
CDX86454 Canola plasma membrane, plastid 89.88 74.75
CDY44448 Canola plasma membrane, plastid 89.88 73.51
Os09t0256650-00 Rice extracellular 24.29 61.22
HORVU2Hr1G006520.1 Barley peroxisome, plasma membrane, vacuole 54.66 57.94
CDY16757 Canola extracellular, peroxisome, plasma membrane 55.47 57.08
TraesCS7B01G410700.1 Wheat plasma membrane 56.68 56.91
TraesCS7A01G503100.1 Wheat plasma membrane 56.68 56.68
TraesCS7A01G533900.1 Wheat plasma membrane 55.47 56.38
TraesCS7D01G521400.1 Wheat plasma membrane 55.47 56.38
CDY56741 Canola plasma membrane 54.66 56.25
TraesCS7B01G451200.1 Wheat plasma membrane 55.06 55.97
TraesCS7B01G410800.1 Wheat golgi, plasma membrane, vacuole 40.49 55.87
HORVU2Hr1G006510.1 Barley plasma membrane 55.47 55.69
TraesCS1A01G360900.1 Wheat plasma membrane 55.47 55.47
TraesCS1B01G377200.1 Wheat plasma membrane 55.47 55.47
TraesCS1D01G365200.1 Wheat plasma membrane 55.47 55.47
TraesCS2A01G043400.1 Wheat plasma membrane 55.06 55.28
TraesCSU01G013400.1 Wheat plasma membrane 55.06 55.28
TraesCSU01G181700.1 Wheat plasma membrane 55.06 55.28
TraesCSU01G191700.1 Wheat plasma membrane 55.06 55.28
TraesCS2A01G051800.1 Wheat plasma membrane 54.66 54.88
TraesCS2D01G042500.1 Wheat plasma membrane 54.66 54.88
TraesCS2D01G042600.1 Wheat plasma membrane 54.66 54.88
TraesCSU01G013200.1 Wheat plasma membrane 54.66 54.88
TraesCSU01G162000.1 Wheat plasma membrane 54.66 54.88
CDY45751 Canola extracellular, golgi, plasma membrane 53.04 54.58
TraesCS7A01G159800.1 Wheat plasma membrane 54.25 54.47
TraesCS7D01G160600.1 Wheat plasma membrane 54.25 54.47
EES20039 Sorghum golgi, plasma membrane, vacuole 52.63 54.39
TraesCS7B01G064800.1 Wheat plasma membrane 45.34 54.37
CDY30733 Canola extracellular, golgi, plasma membrane 52.63 54.17
Zm00001d044421_P001 Maize plasma membrane 53.44 54.1
TraesCS2B01G055900.1 Wheat plasma membrane 53.85 54.06
TraesCS2B01G056100.1 Wheat plasma membrane 53.85 54.06
TraesCS7B01G064400.1 Wheat plasma membrane 53.44 53.66
TraesCS7B01G064600.1 Wheat plasma membrane 53.44 53.66
TraesCS2A01G043200.1 Wheat plasma membrane 50.61 53.65
TraesCS2B01G055700.1 Wheat plasma membrane 50.61 53.65
Os05t0588500-01 Rice golgi, plasma membrane, vacuole 51.42 53.59
EES01039 Sorghum plasma membrane 52.63 53.28
TraesCS7B01G064300.1 Wheat plasma membrane 53.04 53.25
TraesCS2D01G042400.1 Wheat plasma membrane 50.2 53.22
Os01t0605700-01 Rice golgi, plasma membrane, plastid 54.66 53.15
VIT_14s0066g01420.t01 Wine grape plasma membrane 54.66 53.15
TraesCS7B01G064700.1 Wheat plasma membrane 52.63 52.85
CDY30734 Canola plasma membrane 51.01 52.5
Zm00001d011299_P001 Maize plasma membrane 51.42 52.26
HORVU7Hr1G117490.1 Barley plasma membrane 54.66 51.92
GSMUA_Achr6P09180_001 Banana plasma membrane 49.39 51.91
CDY05123 Canola plasma membrane 45.34 51.38
TraesCS7D01G490600.1 Wheat plasma membrane 33.6 51.23
Os01t0606000-00 Rice plasma membrane 53.44 50.97
GSMUA_Achr10P... Banana extracellular, golgi, plasma membrane 48.18 50.85
CDX90787 Canola plasma membrane 44.53 50.46
TraesCS2D01G052100.1 Wheat plasma membrane 39.68 50.26
TraesCSU01G232400.1 Wheat plasma membrane 39.68 50.26
TraesCSU01G249000.1 Wheat golgi, plasma membrane, vacuole 29.15 49.66
Os09t0258700-00 Rice plasma membrane 44.53 49.55
TraesCSU01G249100.1 Wheat golgi, plasma membrane, vacuole 28.74 48.97
HORVU1Hr1G079940.2 Barley peroxisome, plasma membrane, plastid 56.68 48.78
TraesCS7B01G064500.1 Wheat plasma membrane 38.06 48.21
CDY40867 Canola plasma membrane 47.77 47.39
Os12t0178500-00 Rice plasma membrane 40.08 47.37
CDX86834 Canola plasma membrane 47.37 46.99
CDY44578 Canola plasma membrane 44.53 46.22
CDX84358 Canola plasma membrane 38.87 45.93
TraesCS7A01G503300.1 Wheat plasma membrane 46.96 45.85
TraesCS2B01G055800.1 Wheat plasma membrane 53.44 45.83
TraesCS3D01G227000.1 Wheat plasma membrane 37.65 45.81
CDY36831 Canola plasma membrane 43.72 45.38
TraesCS7A01G503200.1 Wheat plasma membrane 47.77 44.7
TraesCS2B01G056000.2 Wheat plasma membrane 46.96 42.34
CDY04628 Canola extracellular, golgi 40.08 40.24
CDY50241 Canola extracellular, golgi, plasma membrane 40.08 40.24
CDX96591 Canola golgi, plasma membrane 40.49 39.84
CDY67972 Canola golgi, plasma membrane 39.68 39.04
CDX75890 Canola plasma membrane 36.03 38.53
CDY09729 Canola golgi, plasma membrane, vacuole 37.25 38.33
CDX82395 Canola plasma membrane 35.63 38.1
CDY34967 Canola plasma membrane 35.22 37.66
CDX90555 Canola golgi, plasma membrane, vacuole 36.44 37.5
CDY69440 Canola plasma membrane 31.98 36.92
CDY45750 Canola cytosol, golgi, plasma membrane 42.51 36.33
CDY27020 Canola golgi, plasma membrane 37.25 35.52
CDX96199 Canola golgi, plasma membrane 36.84 35.27
Os09t0254600-00 Rice plastid 36.44 34.88
CDY24920 Canola extracellular, golgi, vacuole 21.86 34.84
CDY14399 Canola mitochondrion 30.36 33.94
CDX97600 Canola plasma membrane 31.58 33.05
CDY61492 Canola golgi, plasma membrane 30.77 32.76
CDX98492 Canola plasma membrane 31.17 32.63
CDY20083 Canola plasma membrane 30.36 31.78
CDY25828 Canola mitochondrion, plasma membrane 21.86 30.86
CDY32341 Canola plasma membrane 29.15 30.51
CDX84877 Canola golgi, plasma membrane 32.79 29.78
CDY16863 Canola endoplasmic reticulum, plasma membrane 33.2 29.6
CDX87161 Canola endoplasmic reticulum 32.79 29.24
CDY34333 Canola golgi, plasma membrane 31.58 28.57
CDX80379 Canola plasma membrane 33.2 28.47
CDX88041 Canola plasma membrane 33.2 28.47
CDX77928 Canola plasma membrane 32.79 28.42
CDY24854 Canola golgi, plasma membrane 31.17 28.41
CDX73521 Canola golgi, mitochondrion, plasma membrane, plastid 30.36 28.3
CDX92666 Canola golgi, plasma membrane 31.17 28.21
CDY03395 Canola endoplasmic reticulum, golgi, plasma membrane 31.17 28.21
CDY11047 Canola golgi, plasma membrane 31.17 28.21
CDX68492 Canola plasma membrane 32.39 27.97
CDX83046 Canola plasma membrane 32.39 27.97
CDX85668 Canola endoplasmic reticulum, golgi, plasma membrane 33.6 27.95
CDX91144 Canola plasma membrane 33.6 27.95
CDY53626 Canola plasma membrane 32.79 27.84
CDY05819 Canola golgi, plasma membrane 32.79 27.55
CDX69663 Canola golgi, plasma membrane 33.2 27.52
CDX71659 Canola golgi, plasma membrane 32.79 27.46
CDY05867 Canola plasma membrane 31.98 27.34
CDY08093 Canola plasma membrane 31.98 27.34
CDY07676 Canola golgi, plasma membrane 29.15 27.07
CDX78511 Canola plasma membrane 31.98 27.05
CDX97233 Canola golgi, plasma membrane 32.39 26.85
CDY08964 Canola plastid 28.34 24.31
Protein Annotations
EnsemblPlants:CDY04003EnsemblPlantsGene:GSBRNA2T00117550001Gene3D:1.20.1280.290GO:A0A078EWT5GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:SWEET_sugar_transprncoils:CoilPANTHER:PTHR10791PANTHER:PTHR10791:SF42PFAM:PF03083
ProteinID:CDY04003ProteinID:CDY04003.1TMHMM:TMhelixUniParc:UPI0004EBF595MapMan:24.2.6.1:
Description
BnaC02g37180D
Coordinates
chrLK031948:-:287715..289457
Molecular Weight (calculated)
27520.5 Da
IEP (calculated)
9.026
GRAVY (calculated)
0.733
Length
247 amino acids
Sequence
(BLAST)
001: MVSATVARNI AGIFGNIISL FLFLSPIPTF ITIYKMKKVE EYKADPYLAT VLNCALWVFY GLPIVHPDSL LVITINVTGL AIELFYLSVF FYFSPTQGKV
101: KVKVGIWLIG EMVFVGIVAT CTLLLFNTHN PRSTFVGIIC VIFISIMYIA PLTIMSKVIK TKSVKYMPFS LSLANFMNGV IWVIYALIKF DLFILIGNGL
201: GTIPGAVQLI LYACYYKTTP KDEEEENLSK ANLQLSGNEE HAKRVSA
Best Arabidopsis Sequence Match ( AT3G28007.1 )
(BLAST)
001: MVNATVARNI AGICGNVISL FLFLSPIPTF ITIYKKKKVE EYKADPYLAT VLNCALWVFY GLPMVQPDSL LVITINGTGL AIELVYLAIF FFFSPTSRKV
101: KVGLWLIGEM VFVGIVATCT LLLFHTHNQR SSFVGIFCVI FVSLMYIAPL TIMSKVIKTK SVKYMPFSLS LANFLNGVVW VIYALIKFDL FILIGNGLGT
201: VSGAVQLILY ACYYKTTPKD DEDEEDEENL SKVNSQLQLS GNSGQAKRVS A
Arabidopsis Description
SWEET4Bidirectional sugar transporter SWEET4 [Source:UniProtKB/Swiss-Prot;Acc:Q944M5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.