Subcellular Localization
min:
: max
Winner_takes_all: cytosol, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033079.1-P | Field mustard | golgi | 95.12 | 89.66 |
| CDX86393 | Canola | golgi | 91.46 | 87.21 |
| CDX85240 | Canola | golgi | 91.46 | 86.21 |
| AT3G29034.1 | Thale cress | cytosol | 86.59 | 82.56 |
| Solyc02g088130.1.1 | Tomato | extracellular | 37.8 | 63.27 |
| KRH18466 | Soybean | extracellular | 39.02 | 60.38 |
| Os04t0460350-00 | Rice | extracellular | 34.15 | 52.83 |
| KXG26471 | Sorghum | extracellular | 31.71 | 49.06 |
| TraesCS2A01G338500.1 | Wheat | extracellular | 31.71 | 49.06 |
| TraesCS2B01G343400.1 | Wheat | extracellular | 31.71 | 49.06 |
| TraesCS2D01G324500.1 | Wheat | extracellular | 31.71 | 49.06 |
| HORVU2Hr1G080440.1 | Barley | extracellular | 30.49 | 47.17 |
| Zm00001d003420_P001 | Maize | extracellular | 24.39 | 36.36 |
Protein Annotations
| EnsemblPlants:CDY04051 | EnsemblPlantsGene:GSBRNA2T00117653001 | GO:A0A078ES47 | ncoils:Coil | ProteinID:CDY04051 | ProteinID:CDY04051.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDE509 | MapMan:35.2 | : | : |
Description
BnaC02g37660D
Coordinates
chrLK031948:-:828339..828625
Molecular Weight (calculated)
9135.0 Da
IEP (calculated)
10.552
GRAVY (calculated)
-0.361
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRQRRKSEK EEEKREQEDQ KAQPRQRSVS RRNMQSLVIG LVGGSLTLGA YSQTYVSPGT SIGAGLFVLF FGLLVSEGFI SL
1: MVRERRKTEK VEEKREQEVV DQEEKVKPRQ RSVSRRNMQS LVIGLVGGAL TLGAYSQTYV DPGKSIGAGL FVLFFGLLVS EGFISL
Arabidopsis Description
At3g29034 [Source:UniProtKB/TrEMBL;Acc:Q8GX70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.