Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G324500.1 | Wheat | extracellular | 100.0 | 100.0 |
| TraesCS2B01G343400.1 | Wheat | extracellular | 98.11 | 98.11 |
| HORVU2Hr1G080440.1 | Barley | extracellular | 96.23 | 96.23 |
| Os04t0460350-00 | Rice | extracellular | 67.92 | 67.92 |
| KXG26471 | Sorghum | extracellular | 66.04 | 66.04 |
| Zm00001d003420_P001 | Maize | extracellular | 56.6 | 54.55 |
| KRH18466 | Soybean | extracellular | 52.83 | 52.83 |
| Solyc02g088130.1.1 | Tomato | extracellular | 43.4 | 46.94 |
| CDX85240 | Canola | golgi | 52.83 | 32.18 |
| CDY04051 | Canola | cytosol, golgi, plastid | 49.06 | 31.71 |
| Bra025373.1-P | Field mustard | golgi | 50.94 | 31.4 |
| CDX86393 | Canola | golgi | 50.94 | 31.4 |
| AT3G29034.1 | Thale cress | cytosol | 49.06 | 30.23 |
| Bra033079.1-P | Field mustard | golgi | 49.06 | 29.89 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G338500.1 | EnsemblPlantsGene:TraesCS2A01G338500 | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr2A:+:572705588..572705749
Molecular Weight (calculated)
5503.9 Da
IEP (calculated)
6.102
GRAVY (calculated)
1.083
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: MDRNMTGLLL GCVGAAMTVL AYQQTVVSST QCIGAGLAVL VCALCIKEGF FSF
1: MVRERRKTEK VEEKREQEVV DQEEKVKPRQ RSVSRRNMQS LVIGLVGGAL TLGAYSQTYV DPGKSIGAGL FVLFFGLLVS EGFISL
Arabidopsis Description
At3g29034 [Source:UniProtKB/TrEMBL;Acc:Q8GX70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.