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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • nucleus 2
  • extracellular 1
  • golgi 2
  • plastid 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:cytosol, extracellular, golgi, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:extracellular
MultiLoc:golgi
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:golgi
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P
Bra026434.1-P
Bra033296.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G29034.1 Bra033296.1-P AT1G01010.1 21798944
AT3G29034.1 Bra003423.1-P AT3G60600.1 21798944
AT3G29034.1 Bra007547.1-P AT3G60600.1 21798944
AT3G29034.1 Bra014481.1-P AT3G60600.1 21798944
AT3G29034.1 Bra026434.1-P AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86393 Canola golgi 100.0 100.0
CDX85240 Canola golgi 97.67 96.55
Bra033079.1-P Field mustard golgi 90.7 89.66
AT3G29034.1 Thale cress cytosol 83.72 83.72
Solyc02g088130.1.1 Tomato extracellular 39.53 69.39
KRH18466 Soybean extracellular 40.7 66.04
KXG26471 Sorghum extracellular 33.72 54.72
Os04t0460350-00 Rice extracellular 33.72 54.72
TraesCS2A01G338500.1 Wheat extracellular 31.4 50.94
TraesCS2B01G343400.1 Wheat extracellular 31.4 50.94
TraesCS2D01G324500.1 Wheat extracellular 31.4 50.94
HORVU2Hr1G080440.1 Barley extracellular 30.23 49.06
Zm00001d003420_P001 Maize extracellular 26.74 41.82
Protein Annotations
EnsemblPlants:Bra025373.1EnsemblPlants:Bra025373.1-PEnsemblPlantsGene:Bra025373GO:GO:0005575GO:GO:0016020GO:GO:0016021
SEG:segTMHMM:TMhelixUniParc:UPI000253FAE6UniProt:M4E9B7MapMan:35.2:
Description
AT3G29034 (E=2e-016) | unknown protein
Coordinates
chrA06:+:21891298..21891558
Molecular Weight (calculated)
9596.6 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.385
Length
86 amino acids
Sequence
(BLAST)
1: MVRQRRKTEK EEEKREQDGE HEDQKVQPRQ RSVSKRNMQS LVIGLVGGAL TLGAYSQTFV TPGQSIGAGL FVLFFGLLVS EGFISL
Best Arabidopsis Sequence Match ( AT3G29034.1 )
(BLAST)
1: MVRERRKTEK VEEKREQEVV DQEEKVKPRQ RSVSRRNMQS LVIGLVGGAL TLGAYSQTYV DPGKSIGAGL FVLFFGLLVS EGFISL
Arabidopsis Description
At3g29034 [Source:UniProtKB/TrEMBL;Acc:Q8GX70]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.