Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- golgi 2
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025373.1-P | Field mustard | golgi | 100.0 | 100.0 |
| CDX85240 | Canola | golgi | 97.67 | 96.55 |
| CDY04051 | Canola | cytosol, golgi, plastid | 87.21 | 91.46 |
| AT3G29034.1 | Thale cress | cytosol | 83.72 | 83.72 |
| Solyc02g088130.1.1 | Tomato | extracellular | 39.53 | 69.39 |
| KRH18466 | Soybean | extracellular | 40.7 | 66.04 |
| KXG26471 | Sorghum | extracellular | 33.72 | 54.72 |
| Os04t0460350-00 | Rice | extracellular | 33.72 | 54.72 |
| TraesCS2A01G338500.1 | Wheat | extracellular | 31.4 | 50.94 |
| TraesCS2B01G343400.1 | Wheat | extracellular | 31.4 | 50.94 |
| TraesCS2D01G324500.1 | Wheat | extracellular | 31.4 | 50.94 |
| HORVU2Hr1G080440.1 | Barley | extracellular | 30.23 | 49.06 |
| Zm00001d003420_P001 | Maize | extracellular | 26.74 | 41.82 |
Protein Annotations
| EnsemblPlants:CDX86393 | EnsemblPlantsGene:GSBRNA2T00144524001 | GO:A0A078DGE0 | ProteinID:CDX86393 | ProteinID:CDX86393.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000253FAE6 | MapMan:35.2 | : | : | : |
Description
BnaA06g31100D
Coordinates
chrLK031845:+:1309464..1309724
Molecular Weight (calculated)
9596.6 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.385
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRQRRKTEK EEEKREQDGE HEDQKVQPRQ RSVSKRNMQS LVIGLVGGAL TLGAYSQTFV TPGQSIGAGL FVLFFGLLVS EGFISL
1: MVRERRKTEK VEEKREQEVV DQEEKVKPRQ RSVSRRNMQS LVIGLVGGAL TLGAYSQTYV DPGKSIGAGL FVLFFGLLVS EGFISL
Arabidopsis Description
At3g29034 [Source:UniProtKB/TrEMBL;Acc:Q8GX70]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.