Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47642 | Canola | cytosol, endoplasmic reticulum, vacuole | 25.36 | 49.65 |
| AT1G23850.1 | Thale cress | plasma membrane | 63.41 | 49.44 |
| CDY47636 | Canola | mitochondrion, plasma membrane | 31.16 | 40.19 |
| CDY59081 | Canola | mitochondrion, plasma membrane | 30.43 | 39.62 |
| CDY28472 | Canola | endoplasmic reticulum, extracellular | 20.65 | 38.26 |
| CDY25804 | Canola | plasma membrane | 48.19 | 36.44 |
| CDY28471 | Canola | extracellular | 21.74 | 36.36 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 30.07 | 25.3 |
| KRH59308 | Soybean | plasma membrane | 25.72 | 22.68 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 26.09 | 22.64 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 26.09 | 21.75 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 26.81 | 20.73 |
| KRG99324 | Soybean | plasma membrane | 22.1 | 18.48 |
Protein Annotations
| EnsemblPlants:CDY47643 | EnsemblPlantsGene:GSBRNA2T00087863001 | GO:A0A078IER6 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36714 | ProteinID:CDY47643 | ProteinID:CDY47643.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE835A |
| UniProt:A0A078IER6 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g18990DBnaC05g18990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IER6]
Coordinates
chrLK032727:-:67704..69447
Molecular Weight (calculated)
31730.8 Da
IEP (calculated)
9.422
GRAVY (calculated)
0.619
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQAIRNRWR RFLLKRARKL LCGNINLLLF LFICFLPLFF SLIFFELSLQ TTILVASEYF SREVKFWGYY YTAPRDHALL KNLISLLLQT FLLYLFPYSF
101: LDLLTTTTIV SASSLVYTSE EEPLRLGQLV RRTVEICRNR IEGCLITSLF ILLIIGEDLN PSRILFDSVI ALFHGAVFIV LLAKFSKWRH EKSGLWVMLV
201: FMLFALAMRI PCLCLKCSES LSGNGVLYTS FYVGLICVGN IIKWVASVVL YCDCRTRVLE KKCDVETGSK AKAFAK
101: LDLLTTTTIV SASSLVYTSE EEPLRLGQLV RRTVEICRNR IEGCLITSLF ILLIIGEDLN PSRILFDSVI ALFHGAVFIV LLAKFSKWRH EKSGLWVMLV
201: FMLFALAMRI PCLCLKCSES LSGNGVLYTS FYVGLICVGN IIKWVASVVL YCDCRTRVLE KKCDVETGSK AKAFAK
001: MKIEEDLGFI NILKRATKLL CGNINLVLFL FLCSLPLFCF LIFFELSLQT TVSLASQYLV RQLTNWDYYY VPQDASVLEN LIPLLIQTFL LYLFPYGLID
101: LFTTTTIVSA SWTVHTSEEE PLRFGQLVRR TVEICQNRLE GCLITSLYVL LLSTPVFFGF LFVATNYFHI ISLTGSGENS YYYSINIEED AEGYYRSSSV
201: NSPVKMLFDA VLAMFHGAIF LGLLAMFSKW SAGWNMGLVV SVLEEEENGQ SIYGTDALTL SSNYGKGHEK RGLQVMLVFL VFAIAMRMPC FCFKCTESSN
301: GNRVLYTSFY VGLICVGNMI KWVACVVFYE DCRTSVLEKK GDVEIGSKGK TFVA
101: LFTTTTIVSA SWTVHTSEEE PLRFGQLVRR TVEICQNRLE GCLITSLYVL LLSTPVFFGF LFVATNYFHI ISLTGSGENS YYYSINIEED AEGYYRSSSV
201: NSPVKMLFDA VLAMFHGAIF LGLLAMFSKW SAGWNMGLVV SVLEEEENGQ SIYGTDALTL SSNYGKGHEK RGLQVMLVFL VFAIAMRMPC FCFKCTESSN
301: GNRVLYTSFY VGLICVGNMI KWVACVVFYE DCRTSVLEKK GDVEIGSKGK TFVA
Arabidopsis Description
T23E23.1 [Source:UniProtKB/TrEMBL;Acc:Q9LRA9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.