Factsheet for VIT_14s0066g01570.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 5
plasma membrane 4
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0809g00010.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	46.34	47.8
VIT_00s1217g00020.t01	Wine grape	plasma membrane	47.56	43.7
CDY28472	Canola	endoplasmic reticulum, extracellular	16.16	35.57
Bra024621.1-P	Field mustard	mitochondrion, plasma membrane	21.34	33.02
CDY59081	Canola	mitochondrion, plasma membrane	21.34	33.02
CDY47636	Canola	mitochondrion, plasma membrane	21.04	32.24
CDY47643	Canola	mitochondrion, plasma membrane	25.3	30.07
AT1G23840.1	Thale cress	plasma membrane	30.79	29.88
AT1G23830.1	Thale cress	plasma membrane	29.88	28.41
CDY25804	Canola	plasma membrane	30.18	27.12
AT1G23850.1	Thale cress	plasma membrane	28.96	26.84
CDY47642	Canola	cytosol, endoplasmic reticulum, vacuole	11.28	26.24
Bra012390.1-P	Field mustard	plasma membrane	28.96	25.33
CDY28471	Canola	extracellular	11.28	22.42

Protein Annotations

EntrezGene:104881673	MapMan:35.2	ProteinID:CCB58529	ProteinID:CCB58529.1	UniProt:F6HV11	EMBL:FN596252
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	PANTHER:PTHR36714
TMHMM:TMhelix	UniParc:UPI0001984C6D	ArrayExpress:VIT_14s0066g01570	EnsemblPlantsGene:VIT_14s0066g01570	EnsemblPlants:VIT_14s0066g01570.t01	RefSeq:XP_010660939.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:27940202..27941441

Molecular Weight (calculated)

37238.6 Da

IEP (calculated)

8.790

GRAVY (calculated)

0.547

Length

328 amino acids

Sequence
(BLAST)

001: MENNQIMMKE KLVLFGILKE TLTILYKNPS FIILTFLTSL PLFCSLLAHE IIFQQTLIET AKYRPQEDSY KVTCSVGDNG VSLCWYQVID PLDTIKEMIE
101: KVTVRYLLLG LSYLGIVHLL DLFSTIVIVN SASVIYAGEK RMNLKERWHR SMEGVSLKGP LITSIYALLM SSLSLLGLVS LVTQFYMISR AILITIFFGL
201: LLSIAWLPKH MEWNAIWNMG VVMSVLEEKQ GDIALGVSAY VSRGCRRRGL FLMLIFFVWR LALRLSCLYV GWSEGGSGIV VTAVQVSLVC FGNVLKWVAF
301: MVYFYDCKRR FLEKKVDVEQ GSAAEALK

Best Arabidopsis Sequence Match ( AT1G23850.1 )
(BLAST)

001: MKIEEDLGFI NILKRATKLL CGNINLVLFL FLCSLPLFCF LIFFELSLQT TVSLASQYLV RQLTNWDYYY VPQDASVLEN LIPLLIQTFL LYLFPYGLID
101: LFTTTTIVSA SWTVHTSEEE PLRFGQLVRR TVEICQNRLE GCLITSLYVL LLSTPVFFGF LFVATNYFHI ISLTGSGENS YYYSINIEED AEGYYRSSSV
201: NSPVKMLFDA VLAMFHGAIF LGLLAMFSKW SAGWNMGLVV SVLEEEENGQ SIYGTDALTL SSNYGKGHEK RGLQVMLVFL VFAIAMRMPC FCFKCTESSN
301: GNRVLYTSFY VGLICVGNMI KWVACVVFYE DCRTSVLEKK GDVEIGSKGK TFVA

Arabidopsis Description

T23E23.1 [Source:UniProtKB/TrEMBL;Acc:Q9LRA9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.