Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- extracellular 2
- golgi 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G23840.1 | Thale cress | plasma membrane | 65.51 | 66.86 |
| CDY28472 | Canola | endoplasmic reticulum, extracellular | 28.41 | 65.77 |
| CDY25804 | Canola | plasma membrane | 63.77 | 60.27 |
| Bra012390.1-P | Field mustard | plasma membrane | 62.32 | 57.33 |
| AT1G23850.1 | Thale cress | plasma membrane | 53.91 | 52.54 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 28.41 | 29.88 |
| KRG99324 | Soybean | plasma membrane | 27.83 | 29.09 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 26.67 | 28.93 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 26.67 | 27.79 |
| KRH59308 | Soybean | plasma membrane | 24.93 | 27.48 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 27.25 | 26.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838994 | UniProt:A0A178W9A8 | ProteinID:AAC98039.1 | ProteinID:AEE30437.1 | ArrayExpress:AT1G23830 |
| EnsemblPlantsGene:AT1G23830 | RefSeq:AT1G23830 | TAIR:AT1G23830 | RefSeq:AT1G23830-TAIR-G | EnsemblPlants:AT1G23830.1 | TAIR:AT1G23830.1 |
| EMBL:AY058100 | EMBL:AY098950 | Unigene:At.10951 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_564205.1 | ProteinID:OAP14664.1 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR36714 | UniProt:Q9ZUB2 | TMHMM:TMhelix | UniParc:UPI000009C8C6 | SEG:seg |
Description
At1g23830/F5O8_36 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB2]
Coordinates
chr1:-:8422960..8424088
Molecular Weight (calculated)
39413.9 Da
IEP (calculated)
7.551
GRAVY (calculated)
0.517
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: METNSEEKLS VIELLKRALK LLFGNINLLL FLCLCSLPLF FFLIFFELSL QTTVYLTSQF LWKLLILGED LPENDLILIS EKKNDLISWL IQTFLLYFFP
101: YTILDLLTTT TIVAASSIVY TSKEEPLGLL YLVERSIKIC QNRVGGCLIT SLYVLLWSTS VFLFFFLFFF LQFLSGSTNY VSIPYLSREY KGFHYQPTGL
201: FNVVVPLTLL MQCTLFIVLT AKYSKWSSGW NMGLVVSVLE EDEDGQGIYG GDALSLSGWY RKGHEKRDLW LMLMFLVFGL ATRMPCLYSK CSASGNGVMY
301: TGFYVGLICV GNLLKWVTCL ACYHDCKTMV LRKKRDVEQA KTPAA
101: YTILDLLTTT TIVAASSIVY TSKEEPLGLL YLVERSIKIC QNRVGGCLIT SLYVLLWSTS VFLFFFLFFF LQFLSGSTNY VSIPYLSREY KGFHYQPTGL
201: FNVVVPLTLL MQCTLFIVLT AKYSKWSSGW NMGLVVSVLE EDEDGQGIYG GDALSLSGWY RKGHEKRDLW LMLMFLVFGL ATRMPCLYSK CSASGNGVMY
301: TGFYVGLICV GNLLKWVTCL ACYHDCKTMV LRKKRDVEQA KTPAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.