Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47643 | Canola | mitochondrion, plasma membrane | 49.44 | 63.41 |
| AT1G23840.1 | Thale cress | plasma membrane | 54.52 | 57.1 |
| AT1G23830.1 | Thale cress | plasma membrane | 52.54 | 53.91 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 26.84 | 29.87 |
| KRG99324 | Soybean | plasma membrane | 27.4 | 29.39 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 26.84 | 28.96 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 27.4 | 27.17 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 25.14 | 26.89 |
| KRH59308 | Soybean | plasma membrane | 22.88 | 25.88 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838996 | UniProt:A0A178WH01 | ProteinID:AAF87160.1 | ProteinID:AEE30439.1 | EMBL:AK175203 |
| EMBL:AK175422 | EMBL:AK176914 | ArrayExpress:AT1G23850 | EnsemblPlantsGene:AT1G23850 | RefSeq:AT1G23850 | TAIR:AT1G23850 |
| RefSeq:AT1G23850-TAIR-G | EnsemblPlants:AT1G23850.1 | TAIR:AT1G23850.1 | Unigene:At.41517 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564207.1 | ProteinID:OAP17526.1 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0007095 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR36714 | UniProt:Q9LRA9 | TMHMM:TMhelix | UniParc:UPI00000AAB89 |
| SEG:seg | : | : | : | : | : |
Description
T23E23.1 [Source:UniProtKB/TrEMBL;Acc:Q9LRA9]
Coordinates
chr1:-:8425724..8427235
Molecular Weight (calculated)
40006.9 Da
IEP (calculated)
5.005
GRAVY (calculated)
0.456
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIEEDLGFI NILKRATKLL CGNINLVLFL FLCSLPLFCF LIFFELSLQT TVSLASQYLV RQLTNWDYYY VPQDASVLEN LIPLLIQTFL LYLFPYGLID
101: LFTTTTIVSA SWTVHTSEEE PLRFGQLVRR TVEICQNRLE GCLITSLYVL LLSTPVFFGF LFVATNYFHI ISLTGSGENS YYYSINIEED AEGYYRSSSV
201: NSPVKMLFDA VLAMFHGAIF LGLLAMFSKW SAGWNMGLVV SVLEEEENGQ SIYGTDALTL SSNYGKGHEK RGLQVMLVFL VFAIAMRMPC FCFKCTESSN
301: GNRVLYTSFY VGLICVGNMI KWVACVVFYE DCRTSVLEKK GDVEIGSKGK TFVA
101: LFTTTTIVSA SWTVHTSEEE PLRFGQLVRR TVEICQNRLE GCLITSLYVL LLSTPVFFGF LFVATNYFHI ISLTGSGENS YYYSINIEED AEGYYRSSSV
201: NSPVKMLFDA VLAMFHGAIF LGLLAMFSKW SAGWNMGLVV SVLEEEENGQ SIYGTDALTL SSNYGKGHEK RGLQVMLVFL VFAIAMRMPC FCFKCTESSN
301: GNRVLYTSFY VGLICVGNMI KWVACVVFYE DCRTSVLEKK GDVEIGSKGK TFVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.