Factsheet for VIT_00s0809g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
vacuole 4
plasma membrane 5
extracellular 3
endoplasmic reticulum 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1217g00020.t01	Wine grape	plasma membrane	90.88	80.95
VIT_14s0066g01570.t01	Wine grape	vacuole	47.8	46.34
CDY28472	Canola	endoplasmic reticulum, extracellular	16.35	34.9
Bra024621.1-P	Field mustard	mitochondrion, plasma membrane	19.5	29.25
CDY59081	Canola	mitochondrion, plasma membrane	19.5	29.25
CDY47636	Canola	mitochondrion, plasma membrane	19.5	28.97
AT1G23840.1	Thale cress	plasma membrane	30.5	28.7
AT1G23850.1	Thale cress	plasma membrane	29.87	26.84
AT1G23830.1	Thale cress	plasma membrane	28.93	26.67
CDY47643	Canola	mitochondrion, plasma membrane	22.64	26.09
CDY25804	Canola	plasma membrane	29.87	26.03
Bra012390.1-P	Field mustard	plasma membrane	28.62	24.27
CDY47642	Canola	cytosol, endoplasmic reticulum, vacuole	10.38	23.4
CDY28471	Canola	extracellular	10.69	20.61

Protein Annotations

MapMan:35.2	ProteinID:CCB50211	ProteinID:CCB50211.1	UniProt:F6HDB6	EMBL:FN595604	GO:GO:0003674
GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
PANTHER:PTHR36714	TMHMM:TMhelix	UniParc:UPI000210AA1A	ArrayExpress:VIT_00s0809g00010	EnsemblPlantsGene:VIT_00s0809g00010	EnsemblPlants:VIT_00s0809g00010.t01
unigene:Vvi.16265	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:35576114..35577696

Molecular Weight (calculated)

36174.9 Da

IEP (calculated)

8.326

GRAVY (calculated)

0.561

Length

318 amino acids

Sequence
(BLAST)

001: MMKEMRFFFG MLKEALKIPF RNPNFVVFSF LTSLPLFTFM LINDFIIQQT LIQTAKILTQ TLHPNKFFDF DETPLGLIER AIEEVSHKLL LGFIYLGVVH
101: FLDFLNTVAI VDSASIIHKG ETPMNLMDML CRPMKEIRFK GPLITSIYTF ILASFVFLGL ISLATHVFIF SNEVFFFILF AVLFIALLIK SVEWSAIWNM
201: SIVISVLEEK HGDVALVLSS YHSRGSRQFG SLFMLVFFVW SFALRGSCLY MGWSGGGNGI RITSAYVGLV CLGNTMKWLV FVVYLHNCKK QRPERVDPEV
301: GRAAEAVKEG YDQGSSTI

Best Arabidopsis Sequence Match ( AT1G23840.1 )
(BLAST)

001: METKSEEKLS VIELLKRALK LLFGNINLAL FLFLCSLPLF CFLIFFELSL QTTVSLASTY ISKLVNSEED LSENDLLPWL IQTTLLYFFP YTILDLLTTT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT

Arabidopsis Description

At1g23840/F5O8_37 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.