Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 2
- golgi 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59081 | Canola | mitochondrion, plasma membrane | 92.52 | 93.4 |
| CDY28472 | Canola | endoplasmic reticulum, extracellular | 46.73 | 67.11 |
| CDY25804 | Canola | plasma membrane | 58.88 | 34.52 |
| CDY47643 | Canola | mitochondrion, plasma membrane | 40.19 | 31.16 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 32.24 | 21.04 |
| KRG99324 | Soybean | plasma membrane | 30.84 | 20.0 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 28.97 | 19.5 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 28.04 | 18.13 |
| CDY47642 | Canola | cytosol, endoplasmic reticulum, vacuole | 11.68 | 17.73 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 29.44 | 17.65 |
| KRH59308 | Soybean | plasma membrane | 23.36 | 15.97 |
| CDY28471 | Canola | extracellular | 3.74 | 4.85 |
Protein Annotations
| EnsemblPlants:CDY47636 | EnsemblPlantsGene:GSBRNA2T00087856001 | GO:A0A078ICQ0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36714 | ProteinID:CDY47636 | ProteinID:CDY47636.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDC6CE |
| UniProt:A0A078ICQ0 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g18920DBnaC05g18920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICQ0]
Coordinates
chrLK032727:-:37696..38340
Molecular Weight (calculated)
23661.1 Da
IEP (calculated)
8.545
GRAVY (calculated)
0.503
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCLVQRSAK ICRNRLVGCL ITSLYVLLLS TSVFFGFFSD SVNYLSITSL ARDYETFHSK AAVLFHAVVV LIHGTVFIVL AVKFGKWSAG WNMGLVVSVL
101: EEEEGEDGKG GIYGTNALSL SYWYGRGHEK RDLLMMLMFL VFAIATRMPC FYSRCSLSSS GNGVLYTGLY VGLICVGNVV KWVACVVSYY DCRARVLEKK
201: DDVEIGSKAK GFAT
101: EEEEGEDGKG GIYGTNALSL SYWYGRGHEK RDLLMMLMFL VFAIATRMPC FYSRCSLSSS GNGVLYTGLY VGLICVGNVV KWVACVVSYY DCRARVLEKK
201: DDVEIGSKAK GFAT
001: METKSEEKLS VIELLKRALK LLFGNINLAL FLFLCSLPLF CFLIFFELSL QTTVSLASTY ISKLVNSEED LSENDLLPWL IQTTLLYFFP YTILDLLTTT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
Arabidopsis Description
At1g23840/F5O8_37 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.