Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47636 | Canola | mitochondrion, plasma membrane | 67.11 | 46.73 |
| CDY59081 | Canola | mitochondrion, plasma membrane | 63.09 | 44.34 |
| CDY25804 | Canola | plasma membrane | 85.91 | 35.07 |
| AT1G23830.1 | Thale cress | plasma membrane | 65.77 | 28.41 |
| AT1G23840.1 | Thale cress | plasma membrane | 64.43 | 28.4 |
| CDY47643 | Canola | mitochondrion, plasma membrane | 38.26 | 20.65 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 34.9 | 16.35 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 35.57 | 16.16 |
| KRG99324 | Soybean | plasma membrane | 32.89 | 14.85 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 35.57 | 14.85 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 30.87 | 13.9 |
| KRH59308 | Soybean | plasma membrane | 22.82 | 10.86 |
| CDY28471 | Canola | extracellular | 4.03 | 3.64 |
| CDY47642 | Canola | cytosol, endoplasmic reticulum, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY28472 | EnsemblPlantsGene:GSBRNA2T00040362001 | GO:A0A078GTM9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36714 | ProteinID:CDY28472 | ProteinID:CDY28472.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0004EF24E4 | UniProt:A0A078GTM9 | MapMan:35.2 | : | : | : |
Description
BnaC07g13000DBnaC07g13000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTM9]
Coordinates
chrLK032220:+:460155..460777
Molecular Weight (calculated)
16620.3 Da
IEP (calculated)
8.197
GRAVY (calculated)
0.184
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVLVQATLF MYLTAKFIKW SAGWNMSLVF SVLEEEGEDG EEGVSGSNAL SLSAWYRKGH ETRDVWMMLM FLVFALTTRM PCLYSKCSLS SSGNGVLYTG
101: LYVGLICVGN VVKWLACVVR YHDCKTRPLR KKADVEQAKP PATQESFAA
101: LYVGLICVGN VVKWLACVVR YHDCKTRPLR KKADVEQAKP PATQESFAA
001: METNSEEKLS VIELLKRALK LLFGNINLLL FLCLCSLPLF FFLIFFELSL QTTVYLTSQF LWKLLILGED LPENDLILIS EKKNDLISWL IQTFLLYFFP
101: YTILDLLTTT TIVAASSIVY TSKEEPLGLL YLVERSIKIC QNRVGGCLIT SLYVLLWSTS VFLFFFLFFF LQFLSGSTNY VSIPYLSREY KGFHYQPTGL
201: FNVVVPLTLL MQCTLFIVLT AKYSKWSSGW NMGLVVSVLE EDEDGQGIYG GDALSLSGWY RKGHEKRDLW LMLMFLVFGL ATRMPCLYSK CSASGNGVMY
301: TGFYVGLICV GNLLKWVTCL ACYHDCKTMV LRKKRDVEQA KTPAA
101: YTILDLLTTT TIVAASSIVY TSKEEPLGLL YLVERSIKIC QNRVGGCLIT SLYVLLWSTS VFLFFFLFFF LQFLSGSTNY VSIPYLSREY KGFHYQPTGL
201: FNVVVPLTLL MQCTLFIVLT AKYSKWSSGW NMGLVVSVLE EDEDGQGIYG GDALSLSGWY RKGHEKRDLW LMLMFLVFGL ATRMPCLYSK CSASGNGVMY
301: TGFYVGLICV GNLLKWVTCL ACYHDCKTMV LRKKRDVEQA KTPAA
Arabidopsis Description
At1g23830/F5O8_36 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.