Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G23830.1 | Thale cress | plasma membrane | 66.86 | 65.51 |
| CDY28472 | Canola | endoplasmic reticulum, extracellular | 28.4 | 64.43 |
| CDY25804 | Canola | plasma membrane | 62.43 | 57.81 |
| Bra012390.1-P | Field mustard | plasma membrane | 61.24 | 55.2 |
| AT1G23850.1 | Thale cress | plasma membrane | 57.1 | 54.52 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 29.88 | 30.79 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 28.7 | 30.5 |
| KRG99324 | Soybean | plasma membrane | 27.81 | 28.48 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 26.92 | 27.49 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 28.99 | 27.45 |
| KRH59308 | Soybean | plasma membrane | 24.26 | 26.2 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838995 | UniProt:A0A178WNH6 | ProteinID:AAC98038.1 | ProteinID:AEE30438.1 | ArrayExpress:AT1G23840 |
| EnsemblPlantsGene:AT1G23840 | RefSeq:AT1G23840 | TAIR:AT1G23840 | RefSeq:AT1G23840-TAIR-G | EnsemblPlants:AT1G23840.1 | TAIR:AT1G23840.1 |
| EMBL:AY037188 | EMBL:AY142035 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564206.1 |
| ProteinID:OAP19819.1 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR36714 | UniProt:Q9ZUB1 | TMHMM:TMhelix | UniParc:UPI00000A7B48 |
| SEG:seg | : | : | : | : | : |
Description
At1g23840/F5O8_37 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB1]
Coordinates
chr1:-:8424142..8425385
Molecular Weight (calculated)
37893.6 Da
IEP (calculated)
4.980
GRAVY (calculated)
0.607
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: METKSEEKLS VIELLKRALK LLFGNINLAL FLFLCSLPLF CFLIFFELSL QTTVSLASTY ISKLVNSEED LSENDLLPWL IQTTLLYFFP YTILDLLTTT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.