Factsheet for VIT_00s1217g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0809g00010.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	80.95	90.88
VIT_14s0066g01570.t01	Wine grape	vacuole	43.7	47.56
CDY28472	Canola	endoplasmic reticulum, extracellular	14.85	35.57
Bra024621.1-P	Field mustard	mitochondrion, plasma membrane	17.65	29.72
CDY59081	Canola	mitochondrion, plasma membrane	17.65	29.72
CDY47636	Canola	mitochondrion, plasma membrane	17.65	29.44
AT1G23840.1	Thale cress	plasma membrane	27.45	28.99
AT1G23850.1	Thale cress	plasma membrane	27.17	27.4
AT1G23830.1	Thale cress	plasma membrane	26.33	27.25
CDY47643	Canola	mitochondrion, plasma membrane	20.73	26.81
CDY25804	Canola	plasma membrane	27.17	26.58
Bra012390.1-P	Field mustard	plasma membrane	26.05	24.8
CDY47642	Canola	cytosol, endoplasmic reticulum, vacuole	9.52	24.11
CDY28471	Canola	extracellular	9.8	21.21

Protein Annotations

ArrayExpress:VIT_00s1217g00020	EMBL:FN596576	EnsemblPlants:VIT_00s1217g00020.t01	EnsemblPlantsGene:VIT_00s1217g00020	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR36714	ProteinID:CBI38501	ProteinID:CBI38501.3	SEG:seg	TMHMM:TMhelix
UniParc:UPI0001BE4C50	UniProt:D7U6Y1	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chrUn:+:37988187..37989750

Molecular Weight (calculated)

40981.1 Da

IEP (calculated)

9.485

GRAVY (calculated)

0.448

Length

357 amino acids

Sequence
(BLAST)

001: MQIKELKPGR RSKLSPGRIR KLTDELGKWV LLAMEFGLHW SLKEDLENTQ MMMKEMRFFF GMLKEALKIP FRNPNFVVFS FLTSLPLFTF MLINDFIIQQ
101: TLIQTAKILT QTLHPKKFFD FYETPLGLIE RAIEEVSHKL LLGFIYLGVV HFLDFLNTVA IVDSASIIHK GETPMNLMDM LCRPMKEIRF KGPLITSIYT
201: FILASFVFLG LISLATHVFI FSNEVYFFIL FAVLFIALLI KSVEWSAIWN MSIVISVLEE KHGDVALVLS SYHSRGSRQF GSLFMLVFFV WSFALRGSCL
301: YMGWSGGGNG IRITSAYVGL VCLGNTMKWL VFVVYLHNCK NQRLERVDPE VGRAAEA

Best Arabidopsis Sequence Match ( AT1G23850.1 )
(BLAST)

001: MKIEEDLGFI NILKRATKLL CGNINLVLFL FLCSLPLFCF LIFFELSLQT TVSLASQYLV RQLTNWDYYY VPQDASVLEN LIPLLIQTFL LYLFPYGLID
101: LFTTTTIVSA SWTVHTSEEE PLRFGQLVRR TVEICQNRLE GCLITSLYVL LLSTPVFFGF LFVATNYFHI ISLTGSGENS YYYSINIEED AEGYYRSSSV
201: NSPVKMLFDA VLAMFHGAIF LGLLAMFSKW SAGWNMGLVV SVLEEEENGQ SIYGTDALTL SSNYGKGHEK RGLQVMLVFL VFAIAMRMPC FCFKCTESSN
301: GNRVLYTSFY VGLICVGNMI KWVACVVFYE DCRTSVLEKK GDVEIGSKGK TFVA

Arabidopsis Description

T23E23.1 [Source:UniProtKB/TrEMBL;Acc:Q9LRA9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.