Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28471 | Canola | extracellular | 53.9 | 46.06 |
| CDY25804 | Canola | plasma membrane | 70.92 | 27.4 |
| CDY47643 | Canola | mitochondrion, plasma membrane | 49.65 | 25.36 |
| KRH59308 | Soybean | plasma membrane | 26.24 | 11.82 |
| CDY47636 | Canola | mitochondrion, plasma membrane | 17.73 | 11.68 |
| CDY59081 | Canola | mitochondrion, plasma membrane | 17.02 | 11.32 |
| VIT_14s0066g01570.t01 | Wine grape | vacuole | 26.24 | 11.28 |
| KRG99324 | Soybean | plasma membrane | 26.24 | 11.21 |
| KRH43156 | Soybean | extracellular, plasma membrane, vacuole | 26.24 | 11.18 |
| VIT_00s0809g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 23.4 | 10.38 |
| VIT_00s1217g00020.t01 | Wine grape | plasma membrane | 24.11 | 9.52 |
| CDY28472 | Canola | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY47642 | EnsemblPlantsGene:GSBRNA2T00087862001 | GO:A0A078IBZ7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36714 | ProteinID:CDY47642 | ProteinID:CDY47642.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEC51B |
| UniProt:A0A078IBZ7 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g18980DBnaC05g18980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBZ7]
Coordinates
chrLK032727:-:66537..66962
Molecular Weight (calculated)
16124.2 Da
IEP (calculated)
8.322
GRAVY (calculated)
0.613
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMKIDEKLS VMELLKRAVK LIFSNINHAF FLFLCSLPLF CFLIFSKLSL QTTISLAYQF PSHNQINLPE NDLITWLIQT SLLYFFPYSL LDLFTTTMIV
101: AASSTSEEKP LGMLSLVRRS AKICQNRLVG CLITSLYVLL S
101: AASSTSEEKP LGMLSLVRRS AKICQNRLVG CLITSLYVLL S
001: METKSEEKLS VIELLKRALK LLFGNINLAL FLFLCSLPLF CFLIFFELSL QTTVSLASTY ISKLVNSEED LSENDLLPWL IQTTLLYFFP YTILDLLTTT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
101: TIVAASSIAY TSEEEPLGLL YLVGRSFKLC QNKVGGCLIT SLYVLLLSTS VFLGLFSGST IYLYFASLTL EQQIFFNQAV VQDQRFLEQA VVLLDVVVVL
201: IHGTVFIVLA AKFSKWSAGW NISMVVSVLE EEEDSKGIYG SSALSLSAWY LRGQEKRDFW MMLVFLVGAL VTRMPCLYYK CSESLSGNGV LYTGLYVSLI
301: CVGNVVKWVS CVVWYHDCNT RVLRKKGDVE IGSKAFAT
Arabidopsis Description
At1g23840/F5O8_37 [Source:UniProtKB/TrEMBL;Acc:Q9ZUB1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.