Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76583 | Canola | plastid | 68.82 | 90.0 |
| CDX90494 | Canola | endoplasmic reticulum, extracellular, vacuole | 96.47 | 89.13 |
| CDY42949 | Canola | vacuole | 73.53 | 87.41 |
| CDY69842 | Canola | vacuole | 79.41 | 86.54 |
| AT4G16980.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 67.06 | 69.51 |
Protein Annotations
| EnsemblPlants:CDY09660 | EnsemblPlantsGene:GSBRNA2T00031311001 | ProteinID:CDY09660 | ProteinID:CDY09660.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EE9A1F | UniProt:A0A078F5D1 | MapMan:35.2 | : | : |
Description
BnaC07g34010DBnaC07g34010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5D1]
Coordinates
chrLK031998:-:283089..284028
Molecular Weight (calculated)
17378.2 Da
IEP (calculated)
4.366
GRAVY (calculated)
0.284
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MMASSQALLL LTLTMVLISF SVAQSPMMAP SGSVSMPPMP SGGSPMPMMT PPPMPMMTPP PMPMTPPPMP MTPPPMPMAP PPMSMATPPM MPMTPSSSPM
101: SPPTTPMSPG PSPASVPVMA SPPMPAMESS PSPGPGPMPP AMSSPDSGAF NVRIDVVAFS FLVAAHLLLV
101: SPPTTPMSPG PSPASVPVMA SPPMPAMESS PSPGPGPMPP AMSSPDSGAF NVRIDVVAFS FLVAAHLLLV
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
Arabidopsis Description
Arabinogalactan family protein [Source:UniProtKB/TrEMBL;Acc:Q9FT76]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.