Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- plastid 1
- vacuole 5
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42949 | Canola | vacuole | 67.68 | 77.62 |
| CDX76583 | Canola | plastid | 60.98 | 76.92 |
| CDY69842 | Canola | vacuole | 71.95 | 75.64 |
| Bra021074.1-P | Field mustard | plastid | 59.76 | 75.38 |
| CDY09660 | Canola | vacuole | 69.51 | 67.06 |
| Bra040103.1-P | Field mustard | plastid | 54.88 | 66.67 |
| CDX90494 | Canola | endoplasmic reticulum, extracellular, vacuole | 71.95 | 64.13 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827406 | UniProt:A0A178UXA5 | ProteinID:AEE83830.1 | EMBL:AJ299418 | ArrayExpress:AT4G16980 |
| EnsemblPlantsGene:AT4G16980 | RefSeq:AT4G16980 | TAIR:AT4G16980 | RefSeq:AT4G16980-TAIR-G | EnsemblPlants:AT4G16980.1 | TAIR:AT4G16980.1 |
| EMBL:AY035118 | EMBL:AY133870 | GO:GO:0008150 | RefSeq:NP_193431.2 | ProteinID:OAO98160.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR01217 |
| UniProt:Q9FT76 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A67B7 | SEG:seg | : |
Description
Arabinogalactan family protein [Source:UniProtKB/TrEMBL;Acc:Q9FT76]
Coordinates
chr4:+:9556783..9557939
Molecular Weight (calculated)
16749.2 Da
IEP (calculated)
4.366
GRAVY (calculated)
0.299
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.