Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09660 | Canola | vacuole | 89.13 | 96.47 |
| CDX76583 | Canola | plastid | 64.13 | 90.77 |
| CDY69842 | Canola | vacuole | 74.46 | 87.82 |
| CDY42949 | Canola | vacuole | 67.93 | 87.41 |
| AT4G16980.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 64.13 | 71.95 |
Protein Annotations
| EnsemblPlants:CDX90494 | EnsemblPlantsGene:GSBRNA2T00151111001 | ProteinID:CDX90494 | ProteinID:CDX90494.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EE3E8F | MapMan:35.2 | : | : | : |
Description
BnaA03g42870D
Coordinates
chrLK031863:-:512412..513397
Molecular Weight (calculated)
18910.3 Da
IEP (calculated)
4.061
GRAVY (calculated)
0.175
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MMASSQALLL LTLTMVLIPF SLAQSPMMAP SGSMSMPPMP SGGSPMPMMT PPPMPMMTPP PMPMTPPPMP MTPPPMPMAP PPMTMTPPPM PMAPPPMSMA
101: TPPMMPMTPS SSPMSPPTTP MSPGPSPASV PDMASPPMPA MESSPSPGPG PMPPAMSSPD SGSFNVRIDV VALSFLVAAH LLLV
101: TPPMMPMTPS SSPMSPPTTP MSPGPSPASV PDMASPPMPA MESSPSPGPG PMPPAMSSPD SGSFNVRIDV VALSFLVAAH LLLV
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
Arabidopsis Description
Arabinogalactan family protein [Source:UniProtKB/TrEMBL;Acc:Q9FT76]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.