Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76583 | Canola | plastid | 82.69 | 99.23 |
| Bra021074.1-P | Field mustard | plastid | 82.05 | 98.46 |
| CDY42949 | Canola | vacuole | 80.13 | 87.41 |
| CDY09660 | Canola | vacuole | 86.54 | 79.41 |
| CDX90494 | Canola | endoplasmic reticulum, extracellular, vacuole | 87.82 | 74.46 |
| AT4G16980.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 75.64 | 71.95 |
Protein Annotations
| EnsemblPlants:CDY69842 | EnsemblPlantsGene:GSBRNA2T00092830001 | ProteinID:CDY69842 | ProteinID:CDY69842.1 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0004EBC61C | UniProt:A0A078JWB8 | MapMan:35.2 | : | : |
Description
BnaUnng03440DBnaUnng03440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWB8]
Coordinates
chrLK040467:+:2420..3221
Molecular Weight (calculated)
16059.4 Da
IEP (calculated)
4.190
GRAVY (calculated)
0.235
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSQAFLL LTLSMVLVHF SLAQSPMMAP SGSMSMPPMP SGGSPMPMMT PPPMPMMTPP PMAMAPPPMP MTPPPMPMAP MPMTPSSSPM SPPTTMAPSP
101: ETVPDMASPP MMPGMDSSPS PGPMPPAMAS PDSGAFNVRN DVVAISFLVA AHLLLV
101: ETVPDMASPP MMPGMDSSPS PGPMPPAMAS PDSGAFNVRN DVVAISFLVA AHLLLV
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
Arabidopsis Description
Arabinogalactan family protein [Source:UniProtKB/TrEMBL;Acc:Q9FT76]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.