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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • plastid 5
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42949 Canola vacuole 77.04 72.73
Bra021074.1-P Field mustard plastid 64.44 66.92
AT4G16980.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 66.67 54.88
Protein Annotations
EnsemblPlants:Bra040103.1EnsemblPlants:Bra040103.1-PEnsemblPlantsGene:Bra040103SEG:segUniParc:UPI000254431FUniProt:M4FG76
MapMan:35.2:::::
Description
No Description!
Coordinates
chrA01:-:10625666..10630186
Molecular Weight (calculated)
13915.5 Da
IEP (calculated)
3.844
GRAVY (calculated)
-0.030
Length
135 amino acids
Sequence
(BLAST)
001: MVLVSFSLAQ SPMMAPSGSM SMPPMPSGGS PMPMTTPPPM PMMTPPPMPM APPPMPMAPS PMTPMSPSTT PMGPSPASVP DMASPPMPAM ESAPSPGPMP
101: PTMASPDSGA FNELLTRILE VNSELNPTRL LAMLN
Best Arabidopsis Sequence Match ( AT4G16980.1 )
(BLAST)
001: MASSFSSQAF FLLTLSMVLI PFSLAQAPMM APSGSMSMPP MSSGGGSSVP PPVMSPMPMM TPPPMPMTPP PMPMTPPPMP MAPPPMPMAS PPMMPMTPST
101: SPSPLTVPDM PSPPMPSGME SSPSPGPMPP AMAASPDSGA FNVRNNVVTL SCVVGVVAAH FLLV
Arabidopsis Description
Arabinogalactan family protein [Source:UniProtKB/TrEMBL;Acc:Q9FT76]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.