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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • endoplasmic reticulum 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, mitochondrion
Any Predictor:endoplasmic reticulum, golgi, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX84933
CDY03907
CDY15722
CDY27605

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G07860.1 CDX84933 AT1G27300.1 21798944
AT1G07860.1 CDY03907 AT1G27300.1 21798944
AT1G07860.1 CDY15722 AT1G27300.1 21798944
AT1G07860.1 CDY27605 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G07860.1 Thale cress plastid 56.25 66.67
KRG88697 Soybean nucleus 19.38 20.67
Protein Annotations
EnsemblPlants:CDY32810EnsemblPlantsGene:GSBRNA2T00052888001GO:A0A078H2G0GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR34189PANTHER:PTHR34189:SF3ProteinID:CDY32810ProteinID:CDY32810.1SEG:segTMHMM:TMhelix
UniParc:UPI0004EB6931UniProt:A0A078H2G0MapMan:35.2:::
Description
BnaC08g02320DBnaC08g02320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2G0]
Coordinates
chrLK032300:-:4159..4705
Molecular Weight (calculated)
17839.7 Da
IEP (calculated)
10.979
GRAVY (calculated)
-0.424
Length
160 amino acids
Sequence
(BLAST)
001: MAERSFSQLP ISSSHGGRRM MNTRRGVFPV SEYWIHAIPV IIFLCFFTLW FFSHSVSLDE GSGEIMSVRL LEKSMAVRNE SHVSLAVLAS SAVSPATSNQ
101: TLTIHHNVTQ PHSATDKAEI RKREEVKAKG KKKKGGRKEK MEKDINKSKS VKKAKKSLAG
Best Arabidopsis Sequence Match ( AT1G07860.1 )
(BLAST)
001: MAERSFSQLP ISSSHIGRRT GNTRRGIFPV SEYWIHAIPV IVFLCFFTLW IFSHSVSVMN DGEIMSIHRL EKSMAVRNES HVSLAILASS AVSPASSALV
101: AVVSTNQNLT TFHNATQSQQ NATQSVNKAK QPHAV
Arabidopsis Description
Serine/Threonine-kinase RLCKVII protein [Source:UniProtKB/TrEMBL;Acc:Q8RY98]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.