CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43805	Canola	plastid	97.69	98.92
CDX81219	Canola	plastid	89.32	90.29
CDY18717	Canola	plastid	89.5	89.34
AT5G64290.1	Thale cress	plastid	89.32	89.17
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	49.82	83.09
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	49.82	83.09
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	14.77	82.18
Os08t0481800-01	Rice	plastid	34.7	81.59
KRH18862	Soybean	golgi, plasma membrane, vacuole	32.74	75.1
KRH43882	Soybean	endoplasmic reticulum, plastid	73.84	74.51
Solyc01g105540.2.1	Tomato	plastid	74.02	72.98
KRH10575	Soybean	plastid	72.95	72.95
PGSC0003DMT400032652	Potato	plastid	75.8	72.95
VIT_03s0017g00640.t01	Wine grape	plastid	72.95	72.69
TraesCS5A01G248900.1	Wheat	golgi, unclear	69.93	71.98
TraesCS5B01G246600.1	Wheat	plastid	69.93	71.45
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	69.57	71.09
TraesCS7D01G283000.1	Wheat	unclear	70.28	71.04
TraesCS7A01G285000.1	Wheat	golgi	70.28	71.04
HORVU7Hr1G063220.1	Barley	plastid	70.28	71.04
Zm00001d005950_P001	Maize	plastid	69.93	70.94
EER96900	Sorghum	plastid	70.11	70.74
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	69.93	70.68
Zm00001d031253_P001	Maize	plastid	68.68	70.05
EES15485	Sorghum	plastid	67.97	69.33
CDY31328	Canola	plastid	68.15	68.76
GSMUA_Achr10P...	Banana	mitochondrion	67.97	68.7
EES14336	Sorghum	golgi, plastid, vacuole	64.23	68.37
EES04490	Sorghum	plastid	67.79	67.67
HORVU5Hr1G070230.1	Barley	plastid	68.86	67.66
Os09t0469950-00	Rice	plasma membrane	29.0	57.8
CDY46791	Canola	plasma membrane	65.66	56.16
PGSC0003DMT400017518	Potato	plastid	26.16	54.24
Zm00001d020803_P001	Maize	peroxisome	13.52	45.78
CDY53969	Canola	plastid	39.68	40.4
CDX97208	Canola	plastid	40.39	39.89

Protein Annotations

EnsemblPlants:CDX84512	EnsemblPlantsGene:GSBRNA2T00141743001	GO:A0A078D5U6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:CitT-rel
InterPro:SLC13A/DASS	PANTHER:PTHR42826	PANTHER:PTHR42826:SF1	PFAM:PF00939	ProteinID:CDX84512	ProteinID:CDX84512.1
SEG:seg	TIGRFAMs:TIGR00785	TMHMM:TMhelix	UniParc:UPI0004EF3CE3	MapMan:24.2.7.1.2	:

Description

BnaC03g49880D

Coordinates

chrLK031837:-:1551110..1553727

Molecular Weight (calculated)

59804.5 Da

IEP (calculated)

9.413

GRAVY (calculated)

0.613

Length

562 amino acids

Sequence
(BLAST)

001: MESFALHSLS TTATSASFSH HPSRQSLLRR ISSRSPPSSI SLRSHSVKPL ALPLLKPIHR FCTRIAAAPR DDSPPPPPTP SSESPSPQPP QGAKLVPLIL
101: SLSVGLILRF AVSVPEGVTP QGWQLLSIFL STIAGLVLSP LPVGAWAFIG LTASIVTRTL SFSAAFSAFT SEVIWLIVIS FFFARGFVKT GLGDRIATYF
201: VKWLGKSTLG LSYGLTLSEA LIAPAMPSTT ARAGGIFLPI IKSLSLSAGS KPGDPSSRKL GSYLIQSQFQ CAGNSSALFL TAAAQNLLCL KLAEELGVVI
301: ANPWVSWFKA ASLPAIISLL CTPLILYKLY PPETKDTPDA PGIAALKLKQ MGPVTKNEWI MVGTMLLAVT LWICGETLGI PSVVAAMIGL SILLLLGVLN
401: WDDCLSEKSA WDTLAWFAVL VGMAGQLTNL GVVSWMSDCV AKALQSLSLS WPAAFCLLQA AYFFIHYLFA SQTGHVGALF SAFLAMNIAA GVPGILAALA
501: LAYNTNLFGA LTHYSSGQAA VYYGAGYVDL PDVFKIGFVM ATINAIIWGV VGTFWWKFLG LY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.