Factsheet for TraesCS5A01G248900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	98.35	97.64
TraesCS5B01G246600.1	Wheat	plastid	95.97	95.27
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	17.22	93.07
HORVU5Hr1G070230.1	Barley	plastid	93.96	89.69
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	51.47	83.38
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	50.92	82.49
Zm00001d005950_P001	Maize	plastid	82.05	80.87
EER96900	Sorghum	plastid	82.23	80.61
TraesCS7A01G285000.1	Wheat	golgi	78.57	77.16
EES04490	Sorghum	plastid	76.56	74.25
KRH18862	Soybean	golgi, plasma membrane, vacuole	32.05	71.43
GSMUA_Achr10P...	Banana	mitochondrion	72.34	71.04
Bra024282.1-P	Field mustard	plastid	71.79	70.63
PGSC0003DMT400032652	Potato	plastid	75.46	70.55
CDX81219	Canola	plastid	71.79	70.5
CDY43805	Canola	plastid	71.61	70.45
CDX84512	Canola	plastid	71.98	69.93
Os09t0469950-00	Rice	plasma membrane	36.08	69.86
Solyc01g105540.2.1	Tomato	plastid	72.71	69.65
AT5G64290.1	Thale cress	plastid	71.79	69.63
Bra037771.1-P	Field mustard	plastid	71.43	69.27
CDY18717	Canola	plastid	71.43	69.27
VIT_03s0017g00640.t01	Wine grape	plastid	71.25	68.97
KRH43882	Soybean	endoplasmic reticulum, plastid	69.23	67.86
KRH10575	Soybean	plastid	69.23	67.26
AT5G64280.1	Thale cress	plastid	63.92	63.57
CDY31328	Canola	plastid	64.65	63.38
Bra031926.1-P	Field mustard	plastid	64.47	63.31
PGSC0003DMT400017518	Potato	plastid	26.74	53.87
CDY46791	Canola	plasma membrane	64.29	53.42
TraesCS5A01G100600.1	Wheat	golgi, plastid	41.76	41.08

Protein Annotations

MapMan:24.2.7.1.2	InterPro:CitT-rel	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	PFAM:PF00939	PIRSF:PIRSF002457
PANTHER:PTHR42826	PANTHER:PTHR42826:SF4	InterPro:SLC13A/DASS	TIGRFAMs:TIGR00785	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G248900
EnsemblPlants:TraesCS5A01G248900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:463062582..463067060

Molecular Weight (calculated)

58479.9 Da

IEP (calculated)

9.389

GRAVY (calculated)

0.622

Length

546 amino acids

Sequence
(BLAST)

001: MERLRVAVSH RPPLLLPAPN HLRRRQLHLP LPLASRPLSS RHRLLSPAPR RHARHLLASQ TPGPEPDAEA SAEPAGAKLV PLIVSLAAGL AVRFLAPRPA
101: EVTLQAWQLL SIFLSTIAGL VLGPLPVGAW AFLGLTTAVA TRTLPFETAF SAFTNEVIWL IVISFFFARG FVKTGLGDRI ATYFIKWLGG STLGLSYGLT
201: VSEACIAPAM PSTTARAGGV FLPIIKSLSL SAGSKPNDPS SRKLGSYLVM TQFQAGSNSS ALFLTAAAQN LLCLKLAEEL GIVVANPWVS WFQAASLPAI
301: VSLLATPYLL YKIFPPEIKD TPEAPALAAE KLERMGPVTK NEWVMIGTMI LAVSLWVFGD AIGVSSVVAA MLGLSILLLL GVLDWDDCLS EKSAWDTLSW
401: FAVLVAMAGQ LTDLGIVSWM STSVAKLLSS FSLSWPAAFV VLEASYFFVH YLFASQTGHV GALYSAFLAM HVAAGVPGVL SALALAFNTN LFGALTHYSS
501: GQAAVYFGAG YLELPDIFRL GFVTALINAL IWGVVGTFWW KFLGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.