CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	15.28	85.15
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	46.89	78.34
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	46.54	77.74
EER96900	Sorghum	plastid	76.91	77.74
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	74.96	76.73
TraesCS5A01G248900.1	Wheat	golgi, unclear	74.25	76.56
TraesCS5B01G246600.1	Wheat	plastid	74.78	76.55
HORVU5Hr1G070230.1	Barley	plastid	74.96	73.78
EES15485	Sorghum	plastid	72.11	73.68
KRH18862	Soybean	golgi, plasma membrane, vacuole	30.73	70.61
EES14336	Sorghum	golgi, plastid, vacuole	66.07	70.45
CDX81219	Canola	plastid	67.5	68.35
GSMUA_Achr10P...	Banana	mitochondrion	67.5	68.35
Bra024282.1-P	Field mustard	plastid	67.32	68.29
CDY43805	Canola	plastid	67.14	68.11
CDX84512	Canola	plastid	67.67	67.79
AT5G64290.1	Thale cress	plastid	67.32	67.32
Os09t0469950-00	Rice	plasma membrane	33.57	67.02
PGSC0003DMT400032652	Potato	plastid	69.45	66.95
Bra037771.1-P	Field mustard	plastid	66.79	66.79
CDY18717	Canola	plastid	66.61	66.61
Solyc01g105540.2.1	Tomato	plastid	67.32	66.49
KRH43882	Soybean	endoplasmic reticulum, plastid	65.72	66.43
VIT_03s0017g00640.t01	Wine grape	plastid	66.25	66.13
KRH10575	Soybean	plastid	65.9	66.01
Bra031926.1-P	Field mustard	plastid	59.68	60.43
CDY31328	Canola	plastid	59.33	59.96
AT5G64280.1	Thale cress	plastid	58.44	59.93
PGSC0003DMT400017518	Potato	plastid	25.22	52.4
CDY46791	Canola	plasma membrane	58.79	50.38
EES16067	Sorghum	plastid	40.14	38.7

Protein Annotations

MapMan:24.2.7.1.2	EntrezGene:8062816	EMBL:AY123844	InterPro:CitT-rel	EnsemblPlants:EES04490	ProteinID:EES04490
ProteinID:EES04490.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006814
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	PFAM:PF00939	PANTHER:PTHR42826
PANTHER:PTHR42826:SF1	UniProt:Q8L801	InterPro:SLC13A/DASS	EnsemblPlantsGene:SORBI_3004G035500	unigene:Sbi.1979	TIGRFAMs:TIGR00785
TMHMM:TMhelix	UniParc:UPI000009D392	RefSeq:XP_002451514.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:2870533..2874938

Molecular Weight (calculated)

59809.4 Da

IEP (calculated)

9.827

GRAVY (calculated)

0.627

Length

563 amino acids

Sequence
(BLAST)

001: MESSIRLADT LRPSSLPAPA SAHLRRRHLY LHRLPRTSSS SSLFFSPSHH HRLCPTPRHD LLQPLAAAAS GAAKLVPASP APADSSPEPK PSGAKLVPLV
101: ISLAVGLAVR FLAPRPAEVS PRAWQLLSIF LSTIAGLVLG PLPVGAWAFL GLTAAVATHT LPFAAAFAAF TNEIIWLIVI SFFFARGFVK TGLGDRVATY
201: FVKWLGKSTL GLSYGLALGE ACIAPAMPST AARAGGIFLP IIKSLSLSAG SKPNHPSSRK LGTYLVMSQF QAASSSSALF LTAGAQNLLC LNLAEKFGVI
301: IANPWVTWFK AASLPAIVSL LATPYLLYKI FPPEIKDTPE APALAAEKQK QMGPVTKNEW AMIGTMILAV ALWIFGDAIG VSSVVAAMLG LSILLLLGVL
401: DWADILNEKS AWDTLAWFSV LVGMAAQLTS LGIVSWMSSC IANLLQSFSL SWPAAFCVLQ ASYLVIHYLF ASQTGHVGAL YSAFLAMHVA AGVPSVLSAL
501: ALAFNTDLFG GITHYSSGQA AVYFGAGYLD LPDVFRIGFI STLINTLIWG GIGTFWWKFL GLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.