CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole, plastid

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, vacuole
Any Predictor:	golgi, nucleus, plastid, vacuole
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0481800-01	Rice	plastid	38.64	85.36
Zm00001d031253_P001	Maize	plastid	83.9	80.4
EES15485	Sorghum	plastid	83.9	80.4
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	48.3	75.67
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	47.73	74.78
TraesCS7D01G283000.1	Wheat	unclear	76.89	73.02
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	76.89	73.02
TraesCS7A01G285000.1	Wheat	golgi	76.89	73.02
HORVU7Hr1G063220.1	Barley	plastid	76.7	72.84
EER96900	Sorghum	plastid	71.4	67.68
KRH18862	Soybean	golgi, plasma membrane, vacuole	30.87	66.53
EES04490	Sorghum	plastid	70.45	66.07
KRH10575	Soybean	plastid	70.08	65.84
KRH43882	Soybean	endoplasmic reticulum, plastid	69.32	65.71
Bra024282.1-P	Field mustard	plastid	68.18	64.86
CDX81219	Canola	plastid	68.18	64.75
CDY43805	Canola	plastid	67.99	64.68
CDY18717	Canola	plastid	68.75	64.48
Bra037771.1-P	Field mustard	plastid	68.75	64.48
GSMUA_Achr10P...	Banana	mitochondrion	67.8	64.39
CDX84512	Canola	plastid	68.37	64.23
AT5G64290.1	Thale cress	plastid	68.37	64.12
VIT_03s0017g00640.t01	Wine grape	plastid	67.8	63.48
PGSC0003DMT400032652	Potato	plastid	69.13	62.5
Solyc01g105540.2.1	Tomato	plastid	66.86	61.93
CDY31328	Canola	plastid	61.36	58.17
Bra031926.1-P	Field mustard	plastid	60.98	57.91
AT5G64280.1	Thale cress	plastid	59.85	57.56
CDY46791	Canola	plasma membrane	60.42	48.55
PGSC0003DMT400017518	Potato	plastid	24.43	47.6
EES16067	Sorghum	plastid	41.86	37.84

Protein Annotations

MapMan:24.2.7.1.2	UniProt:C5YJQ5	InterPro:CitT-rel	EnsemblPlants:EES14336	ProteinID:EES14336	ProteinID:EES14336.2
GO:GO:0001510	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0006814	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0055085	PFAM:PF00939	PIRSF:PIRSF002457
PANTHER:PTHR42826	PANTHER:PTHR42826:SF4	InterPro:SLC13A/DASS	EnsemblPlantsGene:SORBI_3007G226700	TIGRFAMs:TIGR00785	TMHMM:TMhelix
UniParc:UPI00081AE034	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:65390648..65395428

Molecular Weight (calculated)

55566.1 Da

IEP (calculated)

9.470

GRAVY (calculated)

0.708

Length

528 amino acids

Sequence
(BLAST)

001: MKSSHPTVAT GDIEIGTTTT TTAETVVVVE ADPPGCPASS ATPSPKPAPA PAPAASGGAK PLPLFISLAL GLAVRFLVPR PAQVTSQAWQ LLSIFLSTIA
101: GLVLAPLPVG AWAFLGLTVT VATRTLSFAA AFGAFTNEVI WLIVISFFFA RGFVKTGLGD RVATYFVKWL GRSTLGLSYG LVISEAVISP AMPSTTARAG
201: GVFLPIIKSL SLSSGSKPND PSAKKLGSYL VQSQLQAAAN SSALFLTAAA QNLLCLKLAE EIGVNIGNYW FTWFKVASVP ALLGILVTPY LIYKIFPPEI
301: KDTPEAPALA AEKLKNMGPV TKNEWAMIAT MLLAVSLWIF GQTIGVSSVV ASMIGLSILL LLGVLNWEDC LNEKSAWDTL AWFAILVGLA GQLTKLGIVS
401: WISSSVAKIL RSFSLSWPAA FGVLQASFFF IHYIFASQTA HVGALYSAFL AMHLAADVPA VMSTLALAYN ANLFGSLTHY SSGQSAVYFG AGYVGLGDVF
501: KLGFITAVIN AVIWGAAGAL WWKLLGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.