Factsheet for TraesCS7D01G283000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G285000.1	Wheat	golgi	99.82	99.82
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	98.92	98.92
HORVU7Hr1G063220.1	Barley	plastid	97.84	97.84
Os08t0481800-01	Rice	plastid	41.19	95.82
EES15485	Sorghum	plastid	84.53	85.3
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	50.54	83.38
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	49.46	81.6
TraesCS5D01G256100.1	Wheat	mitochondrion, plastid	77.34	78.18
EES14336	Sorghum	golgi, plastid, vacuole	73.02	76.89
CDX81219	Canola	plastid	71.58	71.58
KRH18862	Soybean	golgi, plasma membrane, vacuole	31.47	71.43
Bra024282.1-P	Field mustard	plastid	71.04	71.17
CDY43805	Canola	plastid	70.86	70.99
AT5G64290.1	Thale cress	plastid	71.58	70.69
CDX84512	Canola	plastid	71.04	70.28
CDY18717	Canola	plastid	70.68	69.8
Bra037771.1-P	Field mustard	plastid	70.68	69.8
GSMUA_Achr10P...	Banana	mitochondrion	69.78	69.78
KRH43882	Soybean	endoplasmic reticulum, plastid	69.6	69.48
PGSC0003DMT400032652	Potato	plastid	72.12	68.66
KRH10575	Soybean	plastid	69.24	68.51
Solyc01g105540.2.1	Tomato	plastid	69.78	68.07
VIT_03s0017g00640.t01	Wine grape	plastid	68.88	67.91
AT5G64280.1	Thale cress	plastid	61.51	62.3
CDY31328	Canola	plastid	61.69	61.58
Bra031926.1-P	Field mustard	plastid	61.51	61.51
PGSC0003DMT400017518	Potato	plastid	25.72	52.77
CDY46791	Canola	plasma membrane	61.33	51.9
Zm00001d020803_P001	Maize	peroxisome	13.31	44.58
TraesCS5D01G113100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	21.94	41.08

Protein Annotations

EnsemblPlants:TraesCS7D01G283000.1	EnsemblPlantsGene:TraesCS7D01G283000	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:CitT-rel	InterPro:SLC13A/DASS
PANTHER:PTHR42826	PANTHER:PTHR42826:SF4	PFAM:PF00939	SEG:seg	TIGRFAMs:TIGR00785	TMHMM:TMhelix
MapMan:24.2.7.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:291505781..291521877

Molecular Weight (calculated)

58911.3 Da

IEP (calculated)

9.782

GRAVY (calculated)

0.603

Length

556 amino acids

Sequence
(BLAST)

001: MERLHLAVSH RPALPLPTPH NHLRRRHLQL QPSTSSLSLC RPISPHISLA PRRHLHPLLA SASATQASSP NTEPAPAPAP AAASAGAKLL PLIASIAVGL
101: AVRFLAPRPP EVTPQAWQLL SIFLSTIAGL VLGPLPVGAW AFLGLTATVA TGTLPFTAAF GAFTNEVIWL IVISFFFARG FVKTGLGDRV ATYFVKWLGG
201: STLGLSYGLT ISEACIAPAM PSTTARAGGV FLPIVKSLSL SAGSKPNDPS AKKLGAYLVQ SQLQASGNSS ALFLTAAAQN LLCLKLAEEA GVKIASPWIS
301: WFKVASLPAI ISLLATPYLL YKIFPPEIKD TPEAPALAAQ KLKKMGPVTK NEWVMVATMI LAVSLWIFGD AIGVSSVVAA MIGLSILLLL GVMNWDDCLN
401: EKSAWDTLAW FAILVGMAGQ LTDLGIVSWM SNCVAKVLQS FSLSWPAAFG VLQASYFFIH YLFASQTAHV GALYSAFLAM HLAAGVPAIL SALALTYNSN
501: LFGALTHYSS GQSAVYYGAG YVDLPDVFKL GFTAAAINAL IWGVVGTFWW KFLGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.