Factsheet for Os08t0481800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
YLoc:	plasma membrane

vacuole: 18557835
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0470000-01	Rice	endoplasmic reticulum, mitochondrion, plasma membrane	33.89	80.2
KRH18862	Soybean	golgi, plasma membrane, vacuole	61.09	59.59
GSMUA_Achr5P17890_001	Banana	mitochondrion, plasma membrane, plastid	81.59	57.86
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, plastid	80.33	56.97
TraesCS7D01G283000.1	Wheat	unclear	95.82	41.19
TraesCS7B01G199700.1	Wheat	plasma membrane, plastid	95.82	41.19
TraesCS7A01G285000.1	Wheat	golgi	95.82	41.19
HORVU7Hr1G063220.1	Barley	plastid	95.4	41.01
Zm00001d031253_P001	Maize	plastid	90.8	39.38
EES15485	Sorghum	plastid	90.38	39.2
EES14336	Sorghum	golgi, plastid, vacuole	85.36	38.64
CDY43805	Canola	plastid	82.01	35.32
Bra024282.1-P	Field mustard	plastid	82.01	35.32
CDX81219	Canola	plastid	81.59	35.07
AT5G64290.1	Thale cress	plastid	82.43	34.99
KRH43882	Soybean	endoplasmic reticulum, plastid	81.17	34.83
CDX84512	Canola	plastid	81.59	34.7
CDY18717	Canola	plastid	81.59	34.64
Bra037771.1-P	Field mustard	plastid	81.59	34.64
GSMUA_Achr10P...	Banana	mitochondrion	79.92	34.35
KRH10575	Soybean	plastid	80.33	34.16
VIT_03s0017g00640.t01	Wine grape	plastid	79.5	33.69
Solyc01g105540.2.1	Tomato	plastid	79.92	33.51
PGSC0003DMT400032652	Potato	plastid	79.92	32.71
Bra031926.1-P	Field mustard	plastid	67.78	29.14
CDY31328	Canola	plastid	67.78	29.08
AT5G64280.1	Thale cress	plastid	66.53	28.96
CDY46791	Canola	plasma membrane	69.04	25.11
Os12t0515400-01	Rice	plastid	41.84	18.25
Os09t0469950-00	Rice	plasma membrane	1.67	1.42
PGSC0003DMT400017518	Potato	plastid	0.42	0.37

Protein Annotations

EnsemblPlants:Os08t0481800-01	EnsemblPlantsGene:Os08g0481800	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006814	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:CitT-rel
InterPro:SLC13A/DASS	PANTHER:PTHR42826	PANTHER:PTHR42826:SF4	PFAM:PF00939	ProteinID:BAF23980.1	ProteinID:BAT05931.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0000DD956E	UniProt:Q0J4Y5	MapMan:24.2.7.1.2	:

Description

Similar to Plastidic general dicarboxylate transporter. (Os08t0481800-01)

Coordinates

chr8:-:23820396..23823075

Molecular Weight (calculated)

25940.8 Da

IEP (calculated)

6.502

GRAVY (calculated)

0.762

Length

239 amino acids

Sequence
(BLAST)

001: YLLYKIFPPE IKDTPEAPAI AAQKLKNMGP VTRNEWIMVA TMILAVSLWI FGDTIGVSSV VAAMIGLSIL LLLGVLNWED CLNEKSAWDT LAWFAILVGM
101: AGQLTNLGIV SWMSNCVAKV LQSFSLSWPA AFGVLQASYF FIHYLFASQT AHVGALYSAF LAMHLAAGVP AILSALALTY NSNLFGALTH YSSGQSAVYY
201: GAGYVDLPDV FKLGFTTAAI NAVIWGVVGT FWWKFLGLY

Best Arabidopsis Sequence Match ( AT5G64290.1 )
(BLAST)

001: MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI
101: LSISVGLILR FAVPVPEGVT PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI SFFFARGFVK TGLGDRIATY
201: FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV
301: ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL
401: NWDDCLSEKS AWDTLAWFAV LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL FSAFLAMHIA AGVPGILAAL
501: ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV MATINAIIWG VVGTFWWKFL GLY

Arabidopsis Description

DIT2-1Dicarboxylate transporter 2.1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.